Cargando…

Comparison of three PCR-based assays for SNP genotyping in plants

BACKGROUND: PCR allelic discrimination technologies have broad applications in the detection of single nucleotide polymorphisms (SNPs) in genetics and genomics. The use of fluorescence-tagged probes is the leading method for targeted SNP detection, but assay costs and error rates could be improved t...

Descripción completa

Detalles Bibliográficos
Autores principales:	Broccanello, Chiara, Chiodi, Claudia, Funk, Andrew, McGrath, J. Mitchell, Panella, Lee, Stevanato, Piergiorgio
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Methodology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5872507/ https://www.ncbi.nlm.nih.gov/pubmed/29610576 http://dx.doi.org/10.1186/s13007-018-0295-6

Ejemplares similares

“Noisy beets”: impact of phenotyping errors on genomic predictions for binary traits in Beta vulgaris
por: Biscarini, Filippo, et al.
Publicado: (2016)

Quantification of rhizomania virus by automated RNA isolation and PCR based methods in sugar beet
por: Chiodi, Claudia, et al.
Publicado: (2021)

Identification and validation of SNP markers linked to seed toxicity in Jatropha curcas L
por: Trebbi, Daniele, et al.
Publicado: (2019)

SNP Alleles Associated With Low Bolting Tendency in Sugar Beet
por: Ravi, Samathmika, et al.
Publicado: (2021)

Targeted Next-Generation Sequencing Identification of Mutations in Disease Resistance Gene Analogs (RGAs) in Wild and Cultivated Beets
por: Stevanato, Piergiorgio, et al.
Publicado: (2017)

Advantages of Amplifluor-like SNP markers over KASP in plant genotyping
por: Jatayev, Satyvaldy, et al.
Publicado: (2017)

Universal probe-based intermediate primer-triggered qPCR (UPIP-qPCR) for SNP genotyping
por: Li, Baowei, et al.
Publicado: (2021)

Multiplex-Ready PCR: A new method for multiplexed SSR and SNP genotyping
por: Hayden, Matthew J, et al.
Publicado: (2008)

Comparison of PrASE and Pyrosequencing for SNP Genotyping
por: Käller, Max, et al.
Publicado: (2006)

Genome-enabled predictions for binomial traits in sugar beet populations
por: Biscarini, Filippo, et al.
Publicado: (2014)

A new polymorphism on chromosome 6 associated with bolting tendency in sugar beet
por: Broccanello, Chiara, et al.
Publicado: (2015)

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants
por: Yang, Guo-Qian, et al.
Publicado: (2016)

A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power
por: Andrews, Kimberly R., et al.
Publicado: (2021)

Computational tradeoffs in multiplex PCR assay design for SNP genotyping
por: Rachlin, John, et al.
Publicado: (2005)

Pooled DNA genotyping on Affymetrix SNP genotyping arrays
por: Kirov, George, et al.
Publicado: (2006)

Real-time PCR assays for genotyping of Cryptococcus gattii in North America
por: Kelley, Erin J, et al.
Publicado: (2014)

Reference genes for normalization of qPCR assays in sugarcane plants under water deficit
por: de Andrade, Larissa Mara, et al.
Publicado: (2017)

Protocol: a simple gel-free method for SNP genotyping using allele-specific primers in rice and other plant species
por: Hirotsu, Naoki, et al.
Publicado: (2010)

Silhouette scores for assessment of SNP genotype clusters
por: Lovmar, Lovisa, et al.
Publicado: (2005)

Whole genome SNP genotype piecemeal imputation
por: Wang, Yining, et al.
Publicado: (2015)

Temperature Switch PCR (TSP): Robust assay design for reliable amplification and genotyping of SNPs
por: Tabone, Tania, et al.
Publicado: (2009)

An improved allele-specific PCR primer design method for SNP marker analysis and its application
por: Liu, Jing, et al.
Publicado: (2012)

GBS-SNP-CROP: a reference-optional pipeline for SNP discovery and plant germplasm characterization using variable length, paired-end genotyping-by-sequencing data
por: Melo, Arthur T. O., et al.
Publicado: (2016)

Development of an SNP Assay for Marker-Assisted Selection of Soil-Borne Rhizoctonia solani AG-2-2-IIIB Resistance in Sugar Beet
por: Ravi, Samathmika, et al.
Publicado: (2021)

Genotyping of polyploid plants using quantitative PCR: application in the breeding of white-fleshed triploid loquats (Eriobotrya japonica)
por: Wang, Haiyan, et al.
Publicado: (2021)

A type-specific nested PCR assay established and applied for investigation of HBV genotype and subgenotype in Chinese patients with chronic HBV infection
por: Nie, Jing-Jing, et al.
Publicado: (2012)

Multiplex PCR-based titration (MPBT) assay for determination of infectious titers of the three Sabin strains of live poliovirus vaccine
por: Manukyan, Hasmik, et al.
Publicado: (2019)

Real-time PCR/MCA assay using fluorescence resonance energy transfer for the genotyping of resistance related DHPS-540 mutations in Plasmodium falciparum
por: Mens, Petra F, et al.
Publicado: (2008)

A new chicken 55K SNP genotyping array
por: Liu, Ranran, et al.
Publicado: (2019)

qPCR assays with dual-labeled probes for genotyping honey bee variants associated with varroa resistance
por: Claeys Boúúaert, David, et al.
Publicado: (2021)

High-throughput SNP discovery and assay development in common bean
por: Hyten, David L, et al.
Publicado: (2010)

Software for optimization of SNP and PCR-RFLP genotyping to discriminate many genomes with the fewest assays
por: Gardner, Shea N, et al.
Publicado: (2005)

Reliable allele detection using SNP-based PCR primers containing Locked Nucleic Acid: application in genetic mapping
por: Nakitandwe, Joy, et al.
Publicado: (2007)

Development and Validation of a HPV-32 Specific PCR Assay
por: Herrel, Nicholas R, et al.
Publicado: (2009)

Sample-ready multiplex qPCR assay for detection of malaria
por: Kamau, Edwin, et al.
Publicado: (2014)

SNP high-throughput screening in grapevine using the SNPlex™ genotyping system
por: Pindo, Massimo, et al.
Publicado: (2008)

Detection of bovine viral diarrhea virus genotype 1 in aerosol by a real time RT-PCR assay
por: Hou, Peili, et al.
Publicado: (2020)

Simple allele-discriminating PCR for cost-effective and rapid genotyping and mapping
por: Bui, Minh, et al.
Publicado: (2009)

Assaying protein palmitoylation in plants
por: Hemsley, Piers A, et al.
Publicado: (2008)

Improved branch and bound algorithm for detecting SNP-SNP interactions in breast cancer
por: Chuang, Li-Yeh, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_jkm6aimn7mv9dk4bfg6jeaar0e