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New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874043/ https://www.ncbi.nlm.nih.gov/pubmed/29590185 http://dx.doi.org/10.1371/journal.pone.0194502 |
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author | Biscotti, Maria Assunta Barucca, Marco Canapa, Adriana |
author_facet | Biscotti, Maria Assunta Barucca, Marco Canapa, Adriana |
author_sort | Biscotti, Maria Assunta |
collection | PubMed |
description | Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of repetitive DNA contributes to our understanding of genome architecture and the mechanisms leading to its evolution. Molluscs represent one of the largest groups of invertebrates and include organisms with a wide variety of morphologies and lifestyles. To increase our knowledge of bivalves at the genome level, we analysed the Antarctic scallop Adamussium colbecki. The screening of the genomic library evidenced the presence of two novel satDNA elements and the CvA transposon. The interspecific investigation performed in this study demonstrated that one of the two satDNAs isolated in A. colbecki is widespread in polar molluscan species, indicating a possible link between repetitive DNA and abiotic factors. Moreover, the transcriptional activity of CvA and its presence in long-diverged bivalves suggests a possible role for this ancient element in shaping the genome architecture of this clade. |
format | Online Article Text |
id | pubmed-5874043 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-58740432018-04-06 New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki Biscotti, Maria Assunta Barucca, Marco Canapa, Adriana PLoS One Research Article Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of repetitive DNA contributes to our understanding of genome architecture and the mechanisms leading to its evolution. Molluscs represent one of the largest groups of invertebrates and include organisms with a wide variety of morphologies and lifestyles. To increase our knowledge of bivalves at the genome level, we analysed the Antarctic scallop Adamussium colbecki. The screening of the genomic library evidenced the presence of two novel satDNA elements and the CvA transposon. The interspecific investigation performed in this study demonstrated that one of the two satDNAs isolated in A. colbecki is widespread in polar molluscan species, indicating a possible link between repetitive DNA and abiotic factors. Moreover, the transcriptional activity of CvA and its presence in long-diverged bivalves suggests a possible role for this ancient element in shaping the genome architecture of this clade. Public Library of Science 2018-03-28 /pmc/articles/PMC5874043/ /pubmed/29590185 http://dx.doi.org/10.1371/journal.pone.0194502 Text en © 2018 Biscotti et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Biscotti, Maria Assunta Barucca, Marco Canapa, Adriana New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title | New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title_full | New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title_fullStr | New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title_full_unstemmed | New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title_short | New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki |
title_sort | new insights into the genome repetitive fraction of the antarctic bivalve adamussium colbecki |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874043/ https://www.ncbi.nlm.nih.gov/pubmed/29590185 http://dx.doi.org/10.1371/journal.pone.0194502 |
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