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New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki

Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of...

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Autores principales: Biscotti, Maria Assunta, Barucca, Marco, Canapa, Adriana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874043/
https://www.ncbi.nlm.nih.gov/pubmed/29590185
http://dx.doi.org/10.1371/journal.pone.0194502
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author Biscotti, Maria Assunta
Barucca, Marco
Canapa, Adriana
author_facet Biscotti, Maria Assunta
Barucca, Marco
Canapa, Adriana
author_sort Biscotti, Maria Assunta
collection PubMed
description Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of repetitive DNA contributes to our understanding of genome architecture and the mechanisms leading to its evolution. Molluscs represent one of the largest groups of invertebrates and include organisms with a wide variety of morphologies and lifestyles. To increase our knowledge of bivalves at the genome level, we analysed the Antarctic scallop Adamussium colbecki. The screening of the genomic library evidenced the presence of two novel satDNA elements and the CvA transposon. The interspecific investigation performed in this study demonstrated that one of the two satDNAs isolated in A. colbecki is widespread in polar molluscan species, indicating a possible link between repetitive DNA and abiotic factors. Moreover, the transcriptional activity of CvA and its presence in long-diverged bivalves suggests a possible role for this ancient element in shaping the genome architecture of this clade.
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spelling pubmed-58740432018-04-06 New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki Biscotti, Maria Assunta Barucca, Marco Canapa, Adriana PLoS One Research Article Repetitive DNA represents the major component of the genome in both plant and animal species. It includes transposable elements (TEs), which are dispersed throughout the genome, and satellite DNAs (satDNAs), which are tandemly organized in long arrays. The study of the structure and organization of repetitive DNA contributes to our understanding of genome architecture and the mechanisms leading to its evolution. Molluscs represent one of the largest groups of invertebrates and include organisms with a wide variety of morphologies and lifestyles. To increase our knowledge of bivalves at the genome level, we analysed the Antarctic scallop Adamussium colbecki. The screening of the genomic library evidenced the presence of two novel satDNA elements and the CvA transposon. The interspecific investigation performed in this study demonstrated that one of the two satDNAs isolated in A. colbecki is widespread in polar molluscan species, indicating a possible link between repetitive DNA and abiotic factors. Moreover, the transcriptional activity of CvA and its presence in long-diverged bivalves suggests a possible role for this ancient element in shaping the genome architecture of this clade. Public Library of Science 2018-03-28 /pmc/articles/PMC5874043/ /pubmed/29590185 http://dx.doi.org/10.1371/journal.pone.0194502 Text en © 2018 Biscotti et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Biscotti, Maria Assunta
Barucca, Marco
Canapa, Adriana
New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title_full New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title_fullStr New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title_full_unstemmed New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title_short New insights into the genome repetitive fraction of the Antarctic bivalve Adamussium colbecki
title_sort new insights into the genome repetitive fraction of the antarctic bivalve adamussium colbecki
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5874043/
https://www.ncbi.nlm.nih.gov/pubmed/29590185
http://dx.doi.org/10.1371/journal.pone.0194502
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