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Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata

The oriental armyworm, Mythimna separata, is a major insect pest in China and other Asian countries. Unfortunately, suitable reference genes for quantitative real-time PCR (qRT-PCR) have not been previously identified in M. separata for normalizing target gene expression. In this study, we evaluated...

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Autores principales: Li, Hong-Bo, Dai, Chang-Geng, Zhang, Chang-Rong, He, Yong-Fu, Ran, Hai-Yan, Chen, Shi-Hong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884543/
https://www.ncbi.nlm.nih.gov/pubmed/29617430
http://dx.doi.org/10.1371/journal.pone.0195096
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author Li, Hong-Bo
Dai, Chang-Geng
Zhang, Chang-Rong
He, Yong-Fu
Ran, Hai-Yan
Chen, Shi-Hong
author_facet Li, Hong-Bo
Dai, Chang-Geng
Zhang, Chang-Rong
He, Yong-Fu
Ran, Hai-Yan
Chen, Shi-Hong
author_sort Li, Hong-Bo
collection PubMed
description The oriental armyworm, Mythimna separata, is a major insect pest in China and other Asian countries. Unfortunately, suitable reference genes for quantitative real-time PCR (qRT-PCR) have not been previously identified in M. separata for normalizing target gene expression. In this study, we evaluated the expression stability of eight candidate genes (18S, ACT, EF1-α, GAPDH, RPS7, RPS13, RPL32 and TUB) in M. separata using the comparative ΔCt method, BestKeeper, Normfinder geNorm and ReFinder, a comprehensive software platform. The results indicated that the appropriate reference gene varied depending on the experimental conditions. We found that ACTIN, EF1-α and TUB were optimal for different developmental stages; TUB, RPS13 and EF1-α showed the most stable expresssion in different tissues; RPS13 and 18S were the best reference genes for monitoring expression under high temperature conditions; TUB, RPS13 and RPS7 exhibited the most stable expression under larval-crowding conditions; RPS7, EF1-α, RPL32 and GAPDH were the best for pesticide exposure experiments. This study provides tools for reliable normalization of qRT-PCR data and forms a foundation for functional studies of target gene expression in M. separata.
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spelling pubmed-58845432018-04-20 Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata Li, Hong-Bo Dai, Chang-Geng Zhang, Chang-Rong He, Yong-Fu Ran, Hai-Yan Chen, Shi-Hong PLoS One Research Article The oriental armyworm, Mythimna separata, is a major insect pest in China and other Asian countries. Unfortunately, suitable reference genes for quantitative real-time PCR (qRT-PCR) have not been previously identified in M. separata for normalizing target gene expression. In this study, we evaluated the expression stability of eight candidate genes (18S, ACT, EF1-α, GAPDH, RPS7, RPS13, RPL32 and TUB) in M. separata using the comparative ΔCt method, BestKeeper, Normfinder geNorm and ReFinder, a comprehensive software platform. The results indicated that the appropriate reference gene varied depending on the experimental conditions. We found that ACTIN, EF1-α and TUB were optimal for different developmental stages; TUB, RPS13 and EF1-α showed the most stable expresssion in different tissues; RPS13 and 18S were the best reference genes for monitoring expression under high temperature conditions; TUB, RPS13 and RPS7 exhibited the most stable expression under larval-crowding conditions; RPS7, EF1-α, RPL32 and GAPDH were the best for pesticide exposure experiments. This study provides tools for reliable normalization of qRT-PCR data and forms a foundation for functional studies of target gene expression in M. separata. Public Library of Science 2018-04-04 /pmc/articles/PMC5884543/ /pubmed/29617430 http://dx.doi.org/10.1371/journal.pone.0195096 Text en © 2018 Li et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Li, Hong-Bo
Dai, Chang-Geng
Zhang, Chang-Rong
He, Yong-Fu
Ran, Hai-Yan
Chen, Shi-Hong
Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title_full Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title_fullStr Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title_full_unstemmed Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title_short Screening potential reference genes for quantitative real-time PCR analysis in the oriental armyworm, Mythimna separata
title_sort screening potential reference genes for quantitative real-time pcr analysis in the oriental armyworm, mythimna separata
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5884543/
https://www.ncbi.nlm.nih.gov/pubmed/29617430
http://dx.doi.org/10.1371/journal.pone.0195096
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