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Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears
INTRODUCTION: The Pap stained cervical smear is a screening tool for cervical cancer. Commercial systems are used for automated screening of liquid based cervical smears. However, there is no image analysis software used for conventional cervical smears. The aim of this study was to develop and test...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Medknow Publications & Media Pvt Ltd
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885606/ https://www.ncbi.nlm.nih.gov/pubmed/29643651 http://dx.doi.org/10.4103/JOC.JOC_110_17 |
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author | Sanyal, Parikshit Ganguli, Prosenjit Barui, Sanghita Deb, Prabal |
author_facet | Sanyal, Parikshit Ganguli, Prosenjit Barui, Sanghita Deb, Prabal |
author_sort | Sanyal, Parikshit |
collection | PubMed |
description | INTRODUCTION: The Pap stained cervical smear is a screening tool for cervical cancer. Commercial systems are used for automated screening of liquid based cervical smears. However, there is no image analysis software used for conventional cervical smears. The aim of this study was to develop and test the diagnostic accuracy of a software for analysis of conventional smears. MATERIALS AND METHODS: The software was developed using Python programming language and open source libraries. It was standardized with images from Bethesda Interobserver Reproducibility Project. One hundred and thirty images from smears which were reported Negative for Intraepithelial Lesion or Malignancy (NILM), and 45 images where some abnormality has been reported, were collected from the archives of the hospital. The software was then tested on the images. RESULTS: The software was able to segregate images based on overall nuclear: cytoplasmic ratio, coefficient of variation (CV) in nuclear size, nuclear membrane irregularity, and clustering. 68.88% of abnormal images were flagged by the software, as well as 19.23% of NILM images. The major difficulties faced were segmentation of overlapping cell clusters and separation of neutrophils. CONCLUSION: The software shows potential as a screening tool for conventional cervical smears; however, further refinement in technique is required. |
format | Online Article Text |
id | pubmed-5885606 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Medknow Publications & Media Pvt Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-58856062018-04-11 Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears Sanyal, Parikshit Ganguli, Prosenjit Barui, Sanghita Deb, Prabal J Cytol Original Article INTRODUCTION: The Pap stained cervical smear is a screening tool for cervical cancer. Commercial systems are used for automated screening of liquid based cervical smears. However, there is no image analysis software used for conventional cervical smears. The aim of this study was to develop and test the diagnostic accuracy of a software for analysis of conventional smears. MATERIALS AND METHODS: The software was developed using Python programming language and open source libraries. It was standardized with images from Bethesda Interobserver Reproducibility Project. One hundred and thirty images from smears which were reported Negative for Intraepithelial Lesion or Malignancy (NILM), and 45 images where some abnormality has been reported, were collected from the archives of the hospital. The software was then tested on the images. RESULTS: The software was able to segregate images based on overall nuclear: cytoplasmic ratio, coefficient of variation (CV) in nuclear size, nuclear membrane irregularity, and clustering. 68.88% of abnormal images were flagged by the software, as well as 19.23% of NILM images. The major difficulties faced were segmentation of overlapping cell clusters and separation of neutrophils. CONCLUSION: The software shows potential as a screening tool for conventional cervical smears; however, further refinement in technique is required. Medknow Publications & Media Pvt Ltd 2018 /pmc/articles/PMC5885606/ /pubmed/29643651 http://dx.doi.org/10.4103/JOC.JOC_110_17 Text en Copyright: © 2018 Journal of Cytology http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms. |
spellingShingle | Original Article Sanyal, Parikshit Ganguli, Prosenjit Barui, Sanghita Deb, Prabal Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title | Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title_full | Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title_fullStr | Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title_full_unstemmed | Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title_short | Pilot Study of an Open-source Image Analysis Software for Automated Screening of Conventional Cervical Smears |
title_sort | pilot study of an open-source image analysis software for automated screening of conventional cervical smears |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5885606/ https://www.ncbi.nlm.nih.gov/pubmed/29643651 http://dx.doi.org/10.4103/JOC.JOC_110_17 |
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