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Automatic mining of symptom severity from psychiatric evaluation notes
OBJECTIVES: As electronic mental health records become more widely available, several approaches have been suggested to automatically extract information from free‐text narrative aiming to support epidemiological research and clinical decision‐making. In this paper, we explore extraction of explicit...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888187/ https://www.ncbi.nlm.nih.gov/pubmed/29271009 http://dx.doi.org/10.1002/mpr.1602 |
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author | Karystianis, George Nevado, Alejo J. Kim, Chi‐Hun Dehghan, Azad Keane, John A. Nenadic, Goran |
author_facet | Karystianis, George Nevado, Alejo J. Kim, Chi‐Hun Dehghan, Azad Keane, John A. Nenadic, Goran |
author_sort | Karystianis, George |
collection | PubMed |
description | OBJECTIVES: As electronic mental health records become more widely available, several approaches have been suggested to automatically extract information from free‐text narrative aiming to support epidemiological research and clinical decision‐making. In this paper, we explore extraction of explicit mentions of symptom severity from initial psychiatric evaluation records. We use the data provided by the 2016 CEGS N‐GRID NLP shared task Track 2, which contains 541 records manually annotated for symptom severity according to the Research Domain Criteria. METHODS: We designed and implemented 3 automatic methods: a knowledge‐driven approach relying on local lexicalized rules based on common syntactic patterns in text suggesting positive valence symptoms; a machine learning method using a neural network; and a hybrid approach combining the first 2 methods with a neural network. RESULTS: The results on an unseen evaluation set of 216 psychiatric evaluation records showed a performance of 80.1% for the rule‐based method, 73.3% for the machine‐learning approach, and 72.0% for the hybrid one. CONCLUSIONS: Although more work is needed to improve the accuracy, the results are encouraging and indicate that automated text mining methods can be used to classify mental health symptom severity from free text psychiatric notes to support epidemiological and clinical research. |
format | Online Article Text |
id | pubmed-5888187 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-58881872018-04-12 Automatic mining of symptom severity from psychiatric evaluation notes Karystianis, George Nevado, Alejo J. Kim, Chi‐Hun Dehghan, Azad Keane, John A. Nenadic, Goran Int J Methods Psychiatr Res Original Articles OBJECTIVES: As electronic mental health records become more widely available, several approaches have been suggested to automatically extract information from free‐text narrative aiming to support epidemiological research and clinical decision‐making. In this paper, we explore extraction of explicit mentions of symptom severity from initial psychiatric evaluation records. We use the data provided by the 2016 CEGS N‐GRID NLP shared task Track 2, which contains 541 records manually annotated for symptom severity according to the Research Domain Criteria. METHODS: We designed and implemented 3 automatic methods: a knowledge‐driven approach relying on local lexicalized rules based on common syntactic patterns in text suggesting positive valence symptoms; a machine learning method using a neural network; and a hybrid approach combining the first 2 methods with a neural network. RESULTS: The results on an unseen evaluation set of 216 psychiatric evaluation records showed a performance of 80.1% for the rule‐based method, 73.3% for the machine‐learning approach, and 72.0% for the hybrid one. CONCLUSIONS: Although more work is needed to improve the accuracy, the results are encouraging and indicate that automated text mining methods can be used to classify mental health symptom severity from free text psychiatric notes to support epidemiological and clinical research. John Wiley and Sons Inc. 2017-12-22 /pmc/articles/PMC5888187/ /pubmed/29271009 http://dx.doi.org/10.1002/mpr.1602 Text en © 2017 The Authors International Journal of Methods in Psychiatric Research Published by John Wiley & Sons Ltd This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Articles Karystianis, George Nevado, Alejo J. Kim, Chi‐Hun Dehghan, Azad Keane, John A. Nenadic, Goran Automatic mining of symptom severity from psychiatric evaluation notes |
title | Automatic mining of symptom severity from psychiatric evaluation notes |
title_full | Automatic mining of symptom severity from psychiatric evaluation notes |
title_fullStr | Automatic mining of symptom severity from psychiatric evaluation notes |
title_full_unstemmed | Automatic mining of symptom severity from psychiatric evaluation notes |
title_short | Automatic mining of symptom severity from psychiatric evaluation notes |
title_sort | automatic mining of symptom severity from psychiatric evaluation notes |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5888187/ https://www.ncbi.nlm.nih.gov/pubmed/29271009 http://dx.doi.org/10.1002/mpr.1602 |
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