Cargando…

Biochemical Analysis of Dimethyl Suberimidate-crosslinked Yeast Nucleosomes

Nucleosomes are the fundamental unit of eukaryotic chromosome packaging, comprised of 147 bp of DNA wrapped around two molecules of each of the core histone proteins H2A, H2B, H3, and H4. Nucleosomes are symmetrical, with one axis of symmetry centered on the homodimeric interaction between the C-ter...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ichiakwa, Yuichi, Kaufman, Paul D.
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Bio-Protocol 2018
Materias:	Methods Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5891137/ https://www.ncbi.nlm.nih.gov/pubmed/29644260 http://dx.doi.org/10.21769/BioProtoc.2770

Ejemplares similares

Genome-wide prediction of DNA mutation effect on nucleosome positions for yeast synthetic genomics
por: Routhier, Etienne, et al.
Publicado: (2021)

DANPOS: Dynamic analysis of nucleosome position and occupancy by sequencing
por: Chen, Kaifu, et al.
Publicado: (2013)

An asymmetric centromeric nucleosome
por: Ichikawa, Yuichi, et al.
Publicado: (2018)

Choreography for nucleosomes: the conformational freedom of the nucleosomal filament and its limitations
por: Engelhardt, Mogens
Publicado: (2007)

Mapping nucleosome positions using DNase-seq
por: Zhong, Jianling, et al.
Publicado: (2016)

NucHMM: a method for quantitative modeling of nucleosome organization identifying functional nucleosome states distinctly associated with splicing potentiality
por: Fang, Kun, et al.
Publicado: (2021)

Quantitative MNase-seq accurately maps nucleosome occupancy levels
por: Chereji, Răzvan V., et al.
Publicado: (2019)

Precise genome-wide mapping of single nucleosomes and linkers in vivo
por: Chereji, Răzvan V., et al.
Publicado: (2018)

Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome
por: Oberbeckmann, Elisa, et al.
Publicado: (2019)

An integrated workflow for crosslinking mass spectrometry
por: Mendes, Marta L, et al.
Publicado: (2019)

Site-Specific Disulfide Crosslinked Nucleosomes with Enhanced Stability
por: Frouws, Timothy D., et al.
Publicado: (2018)

Histone chaperone‐mediated co‐expression assembly of tetrasomes and nucleosomes
por: Okimune, Kei‐ichi, et al.
Publicado: (2021)

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX
por: Hanghøj, Kristian, et al.
Publicado: (2016)

Defining TP53 pioneering capabilities with competitive nucleosome binding assays
por: Yu, Xinyang, et al.
Publicado: (2019)

Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler
por: McKnight, Jeffrey N., et al.
Publicado: (2016)

Genome-wide mapping of nucleosome positioning and DNA methylation within individual DNA molecules
por: Kelly, Theresa K., et al.
Publicado: (2012)

Genome-wide nucleosome map and cytosine methylation levels of an ancient human genome
por: Pedersen, Jakob Skou, et al.
Publicado: (2014)

Structured nucleosome fingerprints enable high-resolution mapping of chromatin architecture within regulatory regions
por: Schep, Alicia N., et al.
Publicado: (2015)

Engineering nucleosomes for generating diverse chromatin assemblies
por: Adhireksan, Zenita, et al.
Publicado: (2021)

Classification and clustering of RNA crosslink-ligation data reveal complex structures and homodimers
por: Zhang, Minjie, et al.
Publicado: (2022)

Global nucleosome occupancy in yeast
por: Bernstein, Bradley E, et al.
Publicado: (2004)

Development of an RNA–protein crosslinker to capture protein interactions with diverse RNA structures in cells
por: Han, Yan, et al.
Publicado: (2022)

Genome-wide reconstitution of chromatin transactions reveals that RSC preferentially disrupts H2AZ-containing nucleosomes
por: Cakiroglu, Aylin, et al.
Publicado: (2019)

Tension-dependent nucleosome remodeling at the pericentromere in yeast
por: Verdaasdonk, Jolien S., et al.
Publicado: (2012)

Biochemical analysis of nucleosome targeting by Tn5 transposase
por: Sato, Shoko, et al.
Publicado: (2019)

A new way of measuring apoptosis by absolute quantitation of inter-nucleosomally fragmented genomic DNA
por: Hooker, David J., et al.
Publicado: (2012)

High-resolution nucleosome mapping of targeted regions using BAC-based enrichment
por: Yigit, Erbay, et al.
Publicado: (2013)

A unified model for yeast transcript definition
por: de Boer, Carl G., et al.
Publicado: (2014)

Natural Single-Nucleosome Epi-Polymorphisms in Yeast
por: Nagarajan, Muniyandi, et al.
Publicado: (2010)

Fast and efficient molecule delivery into Euglena gracilis mediated by cell‐penetrating peptide or dimethyl sulfoxide
por: Gao, Pingwei, et al.
Publicado: (2023)

The dynamic landscape of fission yeast meiosis alternative-splice isoforms
por: Kuang, Zheng, et al.
Publicado: (2017)

A novel hybrid single molecule approach reveals spontaneous DNA motion in the nucleosome
por: Wei, Sijie, et al.
Publicado: (2015)

Global nucleosome distribution and the regulation of transcription in yeast
por: Ercan, Sevinc, et al.
Publicado: (2004)

Hmo1 Protein Affects the Nucleosome Structure and Supports the Nucleosome Reorganization Activity of Yeast FACT
por: Malinina, Daria K., et al.
Publicado: (2022)

Characterizing and controlling intrinsic biases of lambda exonuclease in nascent strand sequencing reveals phasing between nucleosomes and G-quadruplex motifs around a subset of human replication origins
por: Foulk, Michael S., et al.
Publicado: (2015)

Training-free measures based on algorithmic probability identify high nucleosome occupancy in DNA sequences
por: Zenil, Hector, et al.
Publicado: (2019)

Fanconi-like crosslink repair in yeast
por: Daee, Danielle L, et al.
Publicado: (2012)

Robust dimethyl‐based multiplex‐DIA doubles single‐cell proteome depth via a reference channel
por: Thielert, Marvin, et al.
Publicado: (2023)

Systematic analysis of genome-wide fitness data in yeast reveals novel gene function and drug action
por: Hillenmeyer, Maureen E, et al.
Publicado: (2010)

Genome-wide analysis of chromatin features identifies histone modification sensitive and insensitive yeast transcription factors
por: Cheng, Chao, et al.
Publicado: (2011)

Cannot write session to /tmp/vufind_sessions/sess_t9krih3b09q7qrcruu577rdma2