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The Alexandria library, a quantum-chemical database of molecular properties for force field development
Data quality as well as library size are crucial issues for force field development. In order to predict molecular properties in a large chemical space, the foundation to build force fields on needs to encompass a large variety of chemical compounds. The tabulated molecular physicochemical propertie...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5892371/ https://www.ncbi.nlm.nih.gov/pubmed/29633987 http://dx.doi.org/10.1038/sdata.2018.62 |
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author | Ghahremanpour, Mohammad M. van Maaren, Paul J. van der Spoel, David |
author_facet | Ghahremanpour, Mohammad M. van Maaren, Paul J. van der Spoel, David |
author_sort | Ghahremanpour, Mohammad M. |
collection | PubMed |
description | Data quality as well as library size are crucial issues for force field development. In order to predict molecular properties in a large chemical space, the foundation to build force fields on needs to encompass a large variety of chemical compounds. The tabulated molecular physicochemical properties also need to be accurate. Due to the limited transparency in data used for development of existing force fields it is hard to establish data quality and reusability is low. This paper presents the Alexandria library as an open and freely accessible database of optimized molecular geometries, frequencies, electrostatic moments up to the hexadecupole, electrostatic potential, polarizabilities, and thermochemistry, obtained from quantum chemistry calculations for 2704 compounds. Values are tabulated and where available compared to experimental data. This library can assist systematic development and training of empirical force fields for a broad range of molecules. |
format | Online Article Text |
id | pubmed-5892371 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group |
record_format | MEDLINE/PubMed |
spelling | pubmed-58923712018-04-13 The Alexandria library, a quantum-chemical database of molecular properties for force field development Ghahremanpour, Mohammad M. van Maaren, Paul J. van der Spoel, David Sci Data Data Descriptor Data quality as well as library size are crucial issues for force field development. In order to predict molecular properties in a large chemical space, the foundation to build force fields on needs to encompass a large variety of chemical compounds. The tabulated molecular physicochemical properties also need to be accurate. Due to the limited transparency in data used for development of existing force fields it is hard to establish data quality and reusability is low. This paper presents the Alexandria library as an open and freely accessible database of optimized molecular geometries, frequencies, electrostatic moments up to the hexadecupole, electrostatic potential, polarizabilities, and thermochemistry, obtained from quantum chemistry calculations for 2704 compounds. Values are tabulated and where available compared to experimental data. This library can assist systematic development and training of empirical force fields for a broad range of molecules. Nature Publishing Group 2018-04-10 /pmc/articles/PMC5892371/ /pubmed/29633987 http://dx.doi.org/10.1038/sdata.2018.62 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article. |
spellingShingle | Data Descriptor Ghahremanpour, Mohammad M. van Maaren, Paul J. van der Spoel, David The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title | The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title_full | The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title_fullStr | The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title_full_unstemmed | The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title_short | The Alexandria library, a quantum-chemical database of molecular properties for force field development |
title_sort | alexandria library, a quantum-chemical database of molecular properties for force field development |
topic | Data Descriptor |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5892371/ https://www.ncbi.nlm.nih.gov/pubmed/29633987 http://dx.doi.org/10.1038/sdata.2018.62 |
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