Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement

Descriptions are given of the maximum-likelihood gyre method implemented in Phaser for optimizing the orientation and relative position of rigid-body fragments of a model after the orientation of the model has been identified, but before the model has been positioned in the unit cell, and also the r...

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Autores principales: McCoy, Airlie J., Oeffner, Robert D., Millán, Claudia, Sammito, Massimo, Usón, Isabel, Read, Randy J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Research Papers
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5892877/
https://www.ncbi.nlm.nih.gov/pubmed/29652255
http://dx.doi.org/10.1107/S2059798318001353
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author McCoy, Airlie J.
Oeffner, Robert D.
Millán, Claudia
Sammito, Massimo
Usón, Isabel
Read, Randy J.
author_facet McCoy, Airlie J.
Oeffner, Robert D.
Millán, Claudia
Sammito, Massimo
Usón, Isabel
Read, Randy J.
author_sort McCoy, Airlie J.
collection PubMed
description Descriptions are given of the maximum-likelihood gyre method implemented in Phaser for optimizing the orientation and relative position of rigid-body fragments of a model after the orientation of the model has been identified, but before the model has been positioned in the unit cell, and also the related gimble method for the refinement of rigid-body fragments of the model after positioning. Gyre refinement helps to lower the root-mean-square atomic displacements between model and target molecular-replacement solutions for the test case of antibody Fab(26-10) and improves structure solution with ARCIMBOLDO_SHREDDER.
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spelling pubmed-58928772018-04-13 Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement McCoy, Airlie J. Oeffner, Robert D. Millán, Claudia Sammito, Massimo Usón, Isabel Read, Randy J. Acta Crystallogr D Struct Biol Research Papers Descriptions are given of the maximum-likelihood gyre method implemented in Phaser for optimizing the orientation and relative position of rigid-body fragments of a model after the orientation of the model has been identified, but before the model has been positioned in the unit cell, and also the related gimble method for the refinement of rigid-body fragments of the model after positioning. Gyre refinement helps to lower the root-mean-square atomic displacements between model and target molecular-replacement solutions for the test case of antibody Fab(26-10) and improves structure solution with ARCIMBOLDO_SHREDDER. International Union of Crystallography 2018-04-03 /pmc/articles/PMC5892877/ /pubmed/29652255 http://dx.doi.org/10.1107/S2059798318001353 Text en © McCoy et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
McCoy, Airlie J.
Oeffner, Robert D.
Millán, Claudia
Sammito, Massimo
Usón, Isabel
Read, Randy J.
Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title_full Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title_fullStr Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title_full_unstemmed Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title_short Gyre and gimble: a maximum-likelihood replacement for Patterson correlation refinement
title_sort gyre and gimble: a maximum-likelihood replacement for patterson correlation refinement
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5892877/
https://www.ncbi.nlm.nih.gov/pubmed/29652255
http://dx.doi.org/10.1107/S2059798318001353
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