Cargando…

Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities

The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises...

Descripción completa

Detalles Bibliográficos
Autores principales: Gumbs, Rikki, Gray, Claudia L., Wearn, Oliver R., Owen, Nisha R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894989/
https://www.ncbi.nlm.nih.gov/pubmed/29641585
http://dx.doi.org/10.1371/journal.pone.0194680
_version_ 1783313579543363584
author Gumbs, Rikki
Gray, Claudia L.
Wearn, Oliver R.
Owen, Nisha R.
author_facet Gumbs, Rikki
Gray, Claudia L.
Wearn, Oliver R.
Owen, Nisha R.
author_sort Gumbs, Rikki
collection PubMed
description The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises species based on their Evolutionary Distinctiveness (ED), which measures the relative contribution of a species to the total evolutionary history of their taxonomic group, and Global Endangerment (GE), or extinction risk. EDGE prioritisations rely on adequate phylogenetic and extinction risk data to generate meaningful priorities for conservation. However, comprehensive phylogenetic trees of large taxonomic groups are extremely rare and, even when available, become quickly out-of-date due to the rapid rate of species descriptions and taxonomic revisions. Thus, it is important that conservationists can use the available data to incorporate evolutionary history into conservation prioritisation. We compared published and new methods to estimate missing ED scores for species absent from a phylogenetic tree whilst simultaneously correcting the ED scores of their close taxonomic relatives. We found that following artificial removal of species from a phylogenetic tree, the new method provided the closest estimates of their “true” ED score, differing from the true ED score by an average of less than 1%, compared to the 31% and 38% difference of the previous methods. The previous methods also substantially under- and over-estimated scores as more species were artificially removed from a phylogenetic tree. We therefore used the new method to estimate ED scores for all tetrapods. From these scores we updated EDGE prioritisation rankings for all tetrapod species with IUCN Red List assessments, including the first EDGE prioritisation for reptiles. Further, we identified criteria to identify robust priority species in an effort to further inform conservation action whilst limiting uncertainty and anticipating future phylogenetic advances.
format Online
Article
Text
id pubmed-5894989
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-58949892018-05-04 Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities Gumbs, Rikki Gray, Claudia L. Wearn, Oliver R. Owen, Nisha R. PLoS One Research Article The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises species based on their Evolutionary Distinctiveness (ED), which measures the relative contribution of a species to the total evolutionary history of their taxonomic group, and Global Endangerment (GE), or extinction risk. EDGE prioritisations rely on adequate phylogenetic and extinction risk data to generate meaningful priorities for conservation. However, comprehensive phylogenetic trees of large taxonomic groups are extremely rare and, even when available, become quickly out-of-date due to the rapid rate of species descriptions and taxonomic revisions. Thus, it is important that conservationists can use the available data to incorporate evolutionary history into conservation prioritisation. We compared published and new methods to estimate missing ED scores for species absent from a phylogenetic tree whilst simultaneously correcting the ED scores of their close taxonomic relatives. We found that following artificial removal of species from a phylogenetic tree, the new method provided the closest estimates of their “true” ED score, differing from the true ED score by an average of less than 1%, compared to the 31% and 38% difference of the previous methods. The previous methods also substantially under- and over-estimated scores as more species were artificially removed from a phylogenetic tree. We therefore used the new method to estimate ED scores for all tetrapods. From these scores we updated EDGE prioritisation rankings for all tetrapod species with IUCN Red List assessments, including the first EDGE prioritisation for reptiles. Further, we identified criteria to identify robust priority species in an effort to further inform conservation action whilst limiting uncertainty and anticipating future phylogenetic advances. Public Library of Science 2018-04-11 /pmc/articles/PMC5894989/ /pubmed/29641585 http://dx.doi.org/10.1371/journal.pone.0194680 Text en © 2018 Gumbs et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Gumbs, Rikki
Gray, Claudia L.
Wearn, Oliver R.
Owen, Nisha R.
Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title_full Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title_fullStr Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title_full_unstemmed Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title_short Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
title_sort tetrapods on the edge: overcoming data limitations to identify phylogenetic conservation priorities
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894989/
https://www.ncbi.nlm.nih.gov/pubmed/29641585
http://dx.doi.org/10.1371/journal.pone.0194680
work_keys_str_mv AT gumbsrikki tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities
AT grayclaudial tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities
AT wearnoliverr tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities
AT owennishar tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities