Cargando…
Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities
The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894989/ https://www.ncbi.nlm.nih.gov/pubmed/29641585 http://dx.doi.org/10.1371/journal.pone.0194680 |
_version_ | 1783313579543363584 |
---|---|
author | Gumbs, Rikki Gray, Claudia L. Wearn, Oliver R. Owen, Nisha R. |
author_facet | Gumbs, Rikki Gray, Claudia L. Wearn, Oliver R. Owen, Nisha R. |
author_sort | Gumbs, Rikki |
collection | PubMed |
description | The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises species based on their Evolutionary Distinctiveness (ED), which measures the relative contribution of a species to the total evolutionary history of their taxonomic group, and Global Endangerment (GE), or extinction risk. EDGE prioritisations rely on adequate phylogenetic and extinction risk data to generate meaningful priorities for conservation. However, comprehensive phylogenetic trees of large taxonomic groups are extremely rare and, even when available, become quickly out-of-date due to the rapid rate of species descriptions and taxonomic revisions. Thus, it is important that conservationists can use the available data to incorporate evolutionary history into conservation prioritisation. We compared published and new methods to estimate missing ED scores for species absent from a phylogenetic tree whilst simultaneously correcting the ED scores of their close taxonomic relatives. We found that following artificial removal of species from a phylogenetic tree, the new method provided the closest estimates of their “true” ED score, differing from the true ED score by an average of less than 1%, compared to the 31% and 38% difference of the previous methods. The previous methods also substantially under- and over-estimated scores as more species were artificially removed from a phylogenetic tree. We therefore used the new method to estimate ED scores for all tetrapods. From these scores we updated EDGE prioritisation rankings for all tetrapod species with IUCN Red List assessments, including the first EDGE prioritisation for reptiles. Further, we identified criteria to identify robust priority species in an effort to further inform conservation action whilst limiting uncertainty and anticipating future phylogenetic advances. |
format | Online Article Text |
id | pubmed-5894989 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-58949892018-05-04 Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities Gumbs, Rikki Gray, Claudia L. Wearn, Oliver R. Owen, Nisha R. PLoS One Research Article The scale of the ongoing biodiversity crisis requires both effective conservation prioritisation and urgent action. As extinction is non-random across the tree of life, it is important to prioritise threatened species which represent large amounts of evolutionary history. The EDGE metric prioritises species based on their Evolutionary Distinctiveness (ED), which measures the relative contribution of a species to the total evolutionary history of their taxonomic group, and Global Endangerment (GE), or extinction risk. EDGE prioritisations rely on adequate phylogenetic and extinction risk data to generate meaningful priorities for conservation. However, comprehensive phylogenetic trees of large taxonomic groups are extremely rare and, even when available, become quickly out-of-date due to the rapid rate of species descriptions and taxonomic revisions. Thus, it is important that conservationists can use the available data to incorporate evolutionary history into conservation prioritisation. We compared published and new methods to estimate missing ED scores for species absent from a phylogenetic tree whilst simultaneously correcting the ED scores of their close taxonomic relatives. We found that following artificial removal of species from a phylogenetic tree, the new method provided the closest estimates of their “true” ED score, differing from the true ED score by an average of less than 1%, compared to the 31% and 38% difference of the previous methods. The previous methods also substantially under- and over-estimated scores as more species were artificially removed from a phylogenetic tree. We therefore used the new method to estimate ED scores for all tetrapods. From these scores we updated EDGE prioritisation rankings for all tetrapod species with IUCN Red List assessments, including the first EDGE prioritisation for reptiles. Further, we identified criteria to identify robust priority species in an effort to further inform conservation action whilst limiting uncertainty and anticipating future phylogenetic advances. Public Library of Science 2018-04-11 /pmc/articles/PMC5894989/ /pubmed/29641585 http://dx.doi.org/10.1371/journal.pone.0194680 Text en © 2018 Gumbs et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Gumbs, Rikki Gray, Claudia L. Wearn, Oliver R. Owen, Nisha R. Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title | Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title_full | Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title_fullStr | Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title_full_unstemmed | Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title_short | Tetrapods on the EDGE: Overcoming data limitations to identify phylogenetic conservation priorities |
title_sort | tetrapods on the edge: overcoming data limitations to identify phylogenetic conservation priorities |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5894989/ https://www.ncbi.nlm.nih.gov/pubmed/29641585 http://dx.doi.org/10.1371/journal.pone.0194680 |
work_keys_str_mv | AT gumbsrikki tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities AT grayclaudial tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities AT wearnoliverr tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities AT owennishar tetrapodsontheedgeovercomingdatalimitationstoidentifyphylogeneticconservationpriorities |