Cargando…
SQUID: transcriptomic structural variation detection from RNA-seq
Transcripts are frequently modified by structural variations, which lead to fused transcripts of either multiple genes, known as a fusion gene, or a gene and a previously non-transcribed sequence. Detecting these modifications, called transcriptomic structural variations (TSVs), especially in cancer...
Autores principales: | Ma, Cong, Shao, Mingfu, Kingsford, Carl |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896115/ https://www.ncbi.nlm.nih.gov/pubmed/29650026 http://dx.doi.org/10.1186/s13059-018-1421-5 |
Ejemplares similares
-
Quantifying the benefit offered by transcript assembly with Scallop-LR on single-molecule long reads
por: Tung, Laura H., et al.
Publicado: (2019) -
MINTIE: identifying novel structural and splice variants in transcriptomes using RNA-seq data
por: Cmero, Marek, et al.
Publicado: (2021) -
Evaluation of de novo transcriptome assemblies from RNA-Seq data
por: Li, Bo, et al.
Publicado: (2014) -
Detecting differential usage of exons from RNA-seq data
por: Anders, Simon, et al.
Publicado: (2012) -
Transcriptome assembly from long-read RNA-seq alignments with StringTie2
por: Kovaka, Sam, et al.
Publicado: (2019)