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Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom
Planktotalea frisia SH6-1(T) Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe th...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896138/ https://www.ncbi.nlm.nih.gov/pubmed/29682168 http://dx.doi.org/10.1186/s40793-018-0311-5 |
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author | Bakenhus, Insa Voget, Sonja Poehlein, Anja Brinkhoff, Thorsten Daniel, Rolf Simon, Meinhard |
author_facet | Bakenhus, Insa Voget, Sonja Poehlein, Anja Brinkhoff, Thorsten Daniel, Rolf Simon, Meinhard |
author_sort | Bakenhus, Insa |
collection | PubMed |
description | Planktotalea frisia SH6-1(T) Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1(T). The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms. |
format | Online Article Text |
id | pubmed-5896138 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-58961382018-04-20 Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom Bakenhus, Insa Voget, Sonja Poehlein, Anja Brinkhoff, Thorsten Daniel, Rolf Simon, Meinhard Stand Genomic Sci Extended Genome Report Planktotalea frisia SH6-1(T) Hahnke et al. (Int J Syst Evol Microbiol 62:1619–24, 2012) is a planktonic marine bacterium isolated during a phytoplankton bloom from the southern North Sea. It belongs to the Roseobacter group within the alphaproteobacterial family Rhodobacteraceae. Here we describe the draft genome sequence and annotation of the type strain SH6-1(T). The genome comprises 4,106,736 bp and contains 4128 protein-coding and 38 RNA genes. The draft genome sequence provides evidence for at least three extrachromosomal elements, encodes genes for DMSP utilization, quorum sensing, photoheterotrophy and a type IV secretion system. This indicates not only adaptation to a free-living lifestyle of P. frisia but points also to interactions with prokaryotic or eukaryotic organisms. BioMed Central 2018-04-11 /pmc/articles/PMC5896138/ /pubmed/29682168 http://dx.doi.org/10.1186/s40793-018-0311-5 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated. |
spellingShingle | Extended Genome Report Bakenhus, Insa Voget, Sonja Poehlein, Anja Brinkhoff, Thorsten Daniel, Rolf Simon, Meinhard Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title | Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title_full | Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title_fullStr | Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title_full_unstemmed | Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title_short | Genome sequence of Planktotalea frisia type strain (SH6-1(T)), a representative of the Roseobacter group isolated from the North Sea during a phytoplankton bloom |
title_sort | genome sequence of planktotalea frisia type strain (sh6-1(t)), a representative of the roseobacter group isolated from the north sea during a phytoplankton bloom |
topic | Extended Genome Report |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5896138/ https://www.ncbi.nlm.nih.gov/pubmed/29682168 http://dx.doi.org/10.1186/s40793-018-0311-5 |
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