Cargando…

Calculating curly arrows from ab initio wavefunctions

Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Yu, Kilby, Philip, Frankcombe, Terry J., Schmidt, Timothy W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897577/
https://www.ncbi.nlm.nih.gov/pubmed/29651029
http://dx.doi.org/10.1038/s41467-018-03860-2
_version_ 1783313992464203776
author Liu, Yu
Kilby, Philip
Frankcombe, Terry J.
Schmidt, Timothy W.
author_facet Liu, Yu
Kilby, Philip
Frankcombe, Terry J.
Schmidt, Timothy W.
author_sort Liu, Yu
collection PubMed
description Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on the most fundamental property of electrons. The antisymmetry of electronic wavefunctions requires that an N-electron wavefunction repeat itself in 3N dimensions, thus exhibiting tiles. Inspection of wavefunction tiles permits insight into structure and mechanism. Here, we demonstrate that analysis of the wavefunction tile along a reaction coordinate reveals the electron movements depicted by the curly arrow notation for several reactions. The Diels–Alder reaction is revealed to involve the separation and counter propagation of electron spins. This unprecedented method of extracting the movements of electrons during a chemical reaction is a breakthrough in connecting traditional depictions of chemical mechanism with state-of-the-art quantum chemical calculations.
format Online
Article
Text
id pubmed-5897577
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-58975772018-04-16 Calculating curly arrows from ab initio wavefunctions Liu, Yu Kilby, Philip Frankcombe, Terry J. Schmidt, Timothy W. Nat Commun Article Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on the most fundamental property of electrons. The antisymmetry of electronic wavefunctions requires that an N-electron wavefunction repeat itself in 3N dimensions, thus exhibiting tiles. Inspection of wavefunction tiles permits insight into structure and mechanism. Here, we demonstrate that analysis of the wavefunction tile along a reaction coordinate reveals the electron movements depicted by the curly arrow notation for several reactions. The Diels–Alder reaction is revealed to involve the separation and counter propagation of electron spins. This unprecedented method of extracting the movements of electrons during a chemical reaction is a breakthrough in connecting traditional depictions of chemical mechanism with state-of-the-art quantum chemical calculations. Nature Publishing Group UK 2018-04-12 /pmc/articles/PMC5897577/ /pubmed/29651029 http://dx.doi.org/10.1038/s41467-018-03860-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Liu, Yu
Kilby, Philip
Frankcombe, Terry J.
Schmidt, Timothy W.
Calculating curly arrows from ab initio wavefunctions
title Calculating curly arrows from ab initio wavefunctions
title_full Calculating curly arrows from ab initio wavefunctions
title_fullStr Calculating curly arrows from ab initio wavefunctions
title_full_unstemmed Calculating curly arrows from ab initio wavefunctions
title_short Calculating curly arrows from ab initio wavefunctions
title_sort calculating curly arrows from ab initio wavefunctions
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897577/
https://www.ncbi.nlm.nih.gov/pubmed/29651029
http://dx.doi.org/10.1038/s41467-018-03860-2
work_keys_str_mv AT liuyu calculatingcurlyarrowsfromabinitiowavefunctions
AT kilbyphilip calculatingcurlyarrowsfromabinitiowavefunctions
AT frankcombeterryj calculatingcurlyarrowsfromabinitiowavefunctions
AT schmidttimothyw calculatingcurlyarrowsfromabinitiowavefunctions