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Calculating curly arrows from ab initio wavefunctions
Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897577/ https://www.ncbi.nlm.nih.gov/pubmed/29651029 http://dx.doi.org/10.1038/s41467-018-03860-2 |
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author | Liu, Yu Kilby, Philip Frankcombe, Terry J. Schmidt, Timothy W. |
author_facet | Liu, Yu Kilby, Philip Frankcombe, Terry J. Schmidt, Timothy W. |
author_sort | Liu, Yu |
collection | PubMed |
description | Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on the most fundamental property of electrons. The antisymmetry of electronic wavefunctions requires that an N-electron wavefunction repeat itself in 3N dimensions, thus exhibiting tiles. Inspection of wavefunction tiles permits insight into structure and mechanism. Here, we demonstrate that analysis of the wavefunction tile along a reaction coordinate reveals the electron movements depicted by the curly arrow notation for several reactions. The Diels–Alder reaction is revealed to involve the separation and counter propagation of electron spins. This unprecedented method of extracting the movements of electrons during a chemical reaction is a breakthrough in connecting traditional depictions of chemical mechanism with state-of-the-art quantum chemical calculations. |
format | Online Article Text |
id | pubmed-5897577 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-58975772018-04-16 Calculating curly arrows from ab initio wavefunctions Liu, Yu Kilby, Philip Frankcombe, Terry J. Schmidt, Timothy W. Nat Commun Article Despite being at the heart of chemical thought, the curly arrow notation of reaction mechanisms has been treated with suspicion—the connection with rigorous molecular quantum mechanics being unclear. The connection requires a view of the wavefunction that goes beyond molecular orbitals and rests on the most fundamental property of electrons. The antisymmetry of electronic wavefunctions requires that an N-electron wavefunction repeat itself in 3N dimensions, thus exhibiting tiles. Inspection of wavefunction tiles permits insight into structure and mechanism. Here, we demonstrate that analysis of the wavefunction tile along a reaction coordinate reveals the electron movements depicted by the curly arrow notation for several reactions. The Diels–Alder reaction is revealed to involve the separation and counter propagation of electron spins. This unprecedented method of extracting the movements of electrons during a chemical reaction is a breakthrough in connecting traditional depictions of chemical mechanism with state-of-the-art quantum chemical calculations. Nature Publishing Group UK 2018-04-12 /pmc/articles/PMC5897577/ /pubmed/29651029 http://dx.doi.org/10.1038/s41467-018-03860-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Liu, Yu Kilby, Philip Frankcombe, Terry J. Schmidt, Timothy W. Calculating curly arrows from ab initio wavefunctions |
title | Calculating curly arrows from ab initio wavefunctions |
title_full | Calculating curly arrows from ab initio wavefunctions |
title_fullStr | Calculating curly arrows from ab initio wavefunctions |
title_full_unstemmed | Calculating curly arrows from ab initio wavefunctions |
title_short | Calculating curly arrows from ab initio wavefunctions |
title_sort | calculating curly arrows from ab initio wavefunctions |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5897577/ https://www.ncbi.nlm.nih.gov/pubmed/29651029 http://dx.doi.org/10.1038/s41467-018-03860-2 |
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