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A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants

BACKGROUND: Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia chinens...

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Autores principales: Pilkington, Sarah M., Crowhurst, Ross, Hilario, Elena, Nardozza, Simona, Fraser, Lena, Peng, Yongyan, Gunaseelan, Kularajathevan, Simpson, Robert, Tahir, Jibran, Deroles, Simon C., Templeton, Kerry, Luo, Zhiwei, Davy, Marcus, Cheng, Canhong, McNeilage, Mark, Scaglione, Davide, Liu, Yifei, Zhang, Qiong, Datson, Paul, De Silva, Nihal, Gardiner, Susan E., Bassett, Heather, Chagné, David, McCallum, John, Dzierzon, Helge, Deng, Cecilia, Wang, Yen-Yi, Barron, Lorna, Manako, Kelvina, Bowen, Judith, Foster, Toshi M., Erridge, Zoe A., Tiffin, Heather, Waite, Chethi N., Davies, Kevin M., Grierson, Ella P., Laing, William A., Kirk, Rebecca, Chen, Xiuyin, Wood, Marion, Montefiori, Mirco, Brummell, David A., Schwinn, Kathy E., Catanach, Andrew, Fullerton, Christina, Li, Dawei, Meiyalaghan, Sathiyamoorthy, Nieuwenhuizen, Niels, Read, Nicola, Prakash, Roneel, Hunter, Don, Zhang, Huaibi, McKenzie, Marian, Knäbel, Mareike, Harris, Alastair, Allan, Andrew C., Gleave, Andrew, Chen, Angela, Janssen, Bart J., Plunkett, Blue, Ampomah-Dwamena, Charles, Voogd, Charlotte, Leif, Davin, Lafferty, Declan, Souleyre, Edwige J. F., Varkonyi-Gasic, Erika, Gambi, Francesco, Hanley, Jenny, Yao, Jia-Long, Cheung, Joey, David, Karine M., Warren, Ben, Marsh, Ken, Snowden, Kimberley C., Lin-Wang, Kui, Brian, Lara, Martinez-Sanchez, Marcela, Wang, Mindy, Ileperuma, Nadeesha, Macnee, Nikolai, Campin, Robert, McAtee, Peter, Drummond, Revel S. M., Espley, Richard V., Ireland, Hilary S., Wu, Rongmei, Atkinson, Ross G., Karunairetnam, Sakuntala, Bulley, Sean, Chunkath, Shayhan, Hanley, Zac, Storey, Roy, Thrimawithana, Amali H., Thomson, Susan, David, Charles, Testolin, Raffaele, Huang, Hongwen, Hellens, Roger P., Schaffer, Robert J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902842/
https://www.ncbi.nlm.nih.gov/pubmed/29661190
http://dx.doi.org/10.1186/s12864-018-4656-3
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author Pilkington, Sarah M.
Crowhurst, Ross
Hilario, Elena
Nardozza, Simona
Fraser, Lena
Peng, Yongyan
Gunaseelan, Kularajathevan
Simpson, Robert
Tahir, Jibran
Deroles, Simon C.
Templeton, Kerry
Luo, Zhiwei
Davy, Marcus
Cheng, Canhong
McNeilage, Mark
Scaglione, Davide
Liu, Yifei
Zhang, Qiong
Datson, Paul
De Silva, Nihal
Gardiner, Susan E.
Bassett, Heather
Chagné, David
McCallum, John
Dzierzon, Helge
Deng, Cecilia
Wang, Yen-Yi
Barron, Lorna
Manako, Kelvina
Bowen, Judith
Foster, Toshi M.
Erridge, Zoe A.
Tiffin, Heather
Waite, Chethi N.
Davies, Kevin M.
Grierson, Ella P.
Laing, William A.
Kirk, Rebecca
Chen, Xiuyin
Wood, Marion
Montefiori, Mirco
Brummell, David A.
Schwinn, Kathy E.
Catanach, Andrew
Fullerton, Christina
Li, Dawei
Meiyalaghan, Sathiyamoorthy
Nieuwenhuizen, Niels
Read, Nicola
Prakash, Roneel
Hunter, Don
Zhang, Huaibi
McKenzie, Marian
Knäbel, Mareike
Harris, Alastair
Allan, Andrew C.
Gleave, Andrew
Chen, Angela
Janssen, Bart J.
Plunkett, Blue
Ampomah-Dwamena, Charles
Voogd, Charlotte
Leif, Davin
Lafferty, Declan
Souleyre, Edwige J. F.
Varkonyi-Gasic, Erika
Gambi, Francesco
Hanley, Jenny
Yao, Jia-Long
Cheung, Joey
David, Karine M.
Warren, Ben
Marsh, Ken
Snowden, Kimberley C.
Lin-Wang, Kui
Brian, Lara
Martinez-Sanchez, Marcela
Wang, Mindy
Ileperuma, Nadeesha
Macnee, Nikolai
Campin, Robert
McAtee, Peter
Drummond, Revel S. M.
Espley, Richard V.
Ireland, Hilary S.
Wu, Rongmei
Atkinson, Ross G.
Karunairetnam, Sakuntala
Bulley, Sean
Chunkath, Shayhan
Hanley, Zac
Storey, Roy
Thrimawithana, Amali H.
Thomson, Susan
David, Charles
Testolin, Raffaele
Huang, Hongwen
Hellens, Roger P.
Schaffer, Robert J.
author_facet Pilkington, Sarah M.
Crowhurst, Ross
Hilario, Elena
Nardozza, Simona
Fraser, Lena
Peng, Yongyan
Gunaseelan, Kularajathevan
Simpson, Robert
Tahir, Jibran
Deroles, Simon C.
Templeton, Kerry
Luo, Zhiwei
Davy, Marcus
Cheng, Canhong
McNeilage, Mark
Scaglione, Davide
Liu, Yifei
Zhang, Qiong
Datson, Paul
De Silva, Nihal
Gardiner, Susan E.
Bassett, Heather
Chagné, David
McCallum, John
Dzierzon, Helge
Deng, Cecilia
Wang, Yen-Yi
Barron, Lorna
Manako, Kelvina
Bowen, Judith
Foster, Toshi M.
Erridge, Zoe A.
Tiffin, Heather
Waite, Chethi N.
Davies, Kevin M.
Grierson, Ella P.
Laing, William A.
Kirk, Rebecca
Chen, Xiuyin
Wood, Marion
Montefiori, Mirco
Brummell, David A.
Schwinn, Kathy E.
Catanach, Andrew
Fullerton, Christina
Li, Dawei
Meiyalaghan, Sathiyamoorthy
Nieuwenhuizen, Niels
Read, Nicola
Prakash, Roneel
Hunter, Don
Zhang, Huaibi
McKenzie, Marian
Knäbel, Mareike
Harris, Alastair
Allan, Andrew C.
Gleave, Andrew
Chen, Angela
Janssen, Bart J.
Plunkett, Blue
Ampomah-Dwamena, Charles
Voogd, Charlotte
Leif, Davin
Lafferty, Declan
Souleyre, Edwige J. F.
Varkonyi-Gasic, Erika
Gambi, Francesco
Hanley, Jenny
Yao, Jia-Long
Cheung, Joey
David, Karine M.
Warren, Ben
Marsh, Ken
Snowden, Kimberley C.
Lin-Wang, Kui
Brian, Lara
Martinez-Sanchez, Marcela
Wang, Mindy
Ileperuma, Nadeesha
Macnee, Nikolai
Campin, Robert
McAtee, Peter
Drummond, Revel S. M.
Espley, Richard V.
Ireland, Hilary S.
Wu, Rongmei
Atkinson, Ross G.
Karunairetnam, Sakuntala
Bulley, Sean
Chunkath, Shayhan
Hanley, Zac
Storey, Roy
Thrimawithana, Amali H.
Thomson, Susan
David, Charles
Testolin, Raffaele
Huang, Hongwen
Hellens, Roger P.
Schaffer, Robert J.
author_sort Pilkington, Sarah M.
collection PubMed
description BACKGROUND: Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia chinensis (kiwifruit) ‘Hongyang’ draft genome has 164 Mb of sequences unassigned to pseudo-chromosomes, and omissions have been identified in the gene models. RESULTS: A second genome of an A. chinensis (genotype Red5) was fully sequenced. This new sequence resulted in a 554.0 Mb assembly with all but 6 Mb assigned to pseudo-chromosomes. Pseudo-chromosomal comparisons showed a considerable number of translocation events have occurred following a whole genome duplication (WGD) event some consistent with centromeric Robertsonian-like translocations. RNA sequencing data from 12 tissues and ab initio analysis informed a genome-wide manual annotation, using the WebApollo tool. In total, 33,044 gene loci represented by 33,123 isoforms were identified, named and tagged for quality of evidential support. Of these 3114 (9.4%) were identical to a protein within ‘Hongyang’ The Kiwifruit Information Resource (KIR v2). Some proportion of the differences will be varietal polymorphisms. However, as most computationally predicted Red5 models required manual re-annotation this proportion is expected to be small. The quality of the new gene models was tested by fully sequencing 550 cloned ‘Hort16A’ cDNAs and comparing with the predicted protein models for Red5 and both the original ‘Hongyang’ assembly and the revised annotation from KIR v2. Only 48.9% and 63.5% of the cDNAs had a match with 90% identity or better to the original and revised ‘Hongyang’ annotation, respectively, compared with 90.9% to the Red5 models. CONCLUSIONS: Our study highlights the need to take a cautious approach to draft genomes and computationally predicted genes. Our use of the manual annotation tool WebApollo facilitated manual checking and correction of gene models enabling improvement of computational prediction. This utility was especially relevant for certain types of gene families such as the EXPANSIN like genes. Finally, this high quality gene set will supply the kiwifruit and general plant community with a new tool for genomics and other comparative analysis. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-018-4656-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-59028422018-04-23 A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants Pilkington, Sarah M. Crowhurst, Ross Hilario, Elena Nardozza, Simona Fraser, Lena Peng, Yongyan Gunaseelan, Kularajathevan Simpson, Robert Tahir, Jibran Deroles, Simon C. Templeton, Kerry Luo, Zhiwei Davy, Marcus Cheng, Canhong McNeilage, Mark Scaglione, Davide Liu, Yifei Zhang, Qiong Datson, Paul De Silva, Nihal Gardiner, Susan E. Bassett, Heather Chagné, David McCallum, John Dzierzon, Helge Deng, Cecilia Wang, Yen-Yi Barron, Lorna Manako, Kelvina Bowen, Judith Foster, Toshi M. Erridge, Zoe A. Tiffin, Heather Waite, Chethi N. Davies, Kevin M. Grierson, Ella P. Laing, William A. Kirk, Rebecca Chen, Xiuyin Wood, Marion Montefiori, Mirco Brummell, David A. Schwinn, Kathy E. Catanach, Andrew Fullerton, Christina Li, Dawei Meiyalaghan, Sathiyamoorthy Nieuwenhuizen, Niels Read, Nicola Prakash, Roneel Hunter, Don Zhang, Huaibi McKenzie, Marian Knäbel, Mareike Harris, Alastair Allan, Andrew C. Gleave, Andrew Chen, Angela Janssen, Bart J. Plunkett, Blue Ampomah-Dwamena, Charles Voogd, Charlotte Leif, Davin Lafferty, Declan Souleyre, Edwige J. F. Varkonyi-Gasic, Erika Gambi, Francesco Hanley, Jenny Yao, Jia-Long Cheung, Joey David, Karine M. Warren, Ben Marsh, Ken Snowden, Kimberley C. Lin-Wang, Kui Brian, Lara Martinez-Sanchez, Marcela Wang, Mindy Ileperuma, Nadeesha Macnee, Nikolai Campin, Robert McAtee, Peter Drummond, Revel S. M. Espley, Richard V. Ireland, Hilary S. Wu, Rongmei Atkinson, Ross G. Karunairetnam, Sakuntala Bulley, Sean Chunkath, Shayhan Hanley, Zac Storey, Roy Thrimawithana, Amali H. Thomson, Susan David, Charles Testolin, Raffaele Huang, Hongwen Hellens, Roger P. Schaffer, Robert J. BMC Genomics Research Article BACKGROUND: Most published genome sequences are drafts, and most are dominated by computational gene prediction. Draft genomes typically incorporate considerable sequence data that are not assigned to chromosomes, and predicted genes without quality confidence measures. The current Actinidia chinensis (kiwifruit) ‘Hongyang’ draft genome has 164 Mb of sequences unassigned to pseudo-chromosomes, and omissions have been identified in the gene models. RESULTS: A second genome of an A. chinensis (genotype Red5) was fully sequenced. This new sequence resulted in a 554.0 Mb assembly with all but 6 Mb assigned to pseudo-chromosomes. Pseudo-chromosomal comparisons showed a considerable number of translocation events have occurred following a whole genome duplication (WGD) event some consistent with centromeric Robertsonian-like translocations. RNA sequencing data from 12 tissues and ab initio analysis informed a genome-wide manual annotation, using the WebApollo tool. In total, 33,044 gene loci represented by 33,123 isoforms were identified, named and tagged for quality of evidential support. Of these 3114 (9.4%) were identical to a protein within ‘Hongyang’ The Kiwifruit Information Resource (KIR v2). Some proportion of the differences will be varietal polymorphisms. However, as most computationally predicted Red5 models required manual re-annotation this proportion is expected to be small. The quality of the new gene models was tested by fully sequencing 550 cloned ‘Hort16A’ cDNAs and comparing with the predicted protein models for Red5 and both the original ‘Hongyang’ assembly and the revised annotation from KIR v2. Only 48.9% and 63.5% of the cDNAs had a match with 90% identity or better to the original and revised ‘Hongyang’ annotation, respectively, compared with 90.9% to the Red5 models. CONCLUSIONS: Our study highlights the need to take a cautious approach to draft genomes and computationally predicted genes. Our use of the manual annotation tool WebApollo facilitated manual checking and correction of gene models enabling improvement of computational prediction. This utility was especially relevant for certain types of gene families such as the EXPANSIN like genes. Finally, this high quality gene set will supply the kiwifruit and general plant community with a new tool for genomics and other comparative analysis. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12864-018-4656-3) contains supplementary material, which is available to authorized users. BioMed Central 2018-04-16 /pmc/articles/PMC5902842/ /pubmed/29661190 http://dx.doi.org/10.1186/s12864-018-4656-3 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Article
Pilkington, Sarah M.
Crowhurst, Ross
Hilario, Elena
Nardozza, Simona
Fraser, Lena
Peng, Yongyan
Gunaseelan, Kularajathevan
Simpson, Robert
Tahir, Jibran
Deroles, Simon C.
Templeton, Kerry
Luo, Zhiwei
Davy, Marcus
Cheng, Canhong
McNeilage, Mark
Scaglione, Davide
Liu, Yifei
Zhang, Qiong
Datson, Paul
De Silva, Nihal
Gardiner, Susan E.
Bassett, Heather
Chagné, David
McCallum, John
Dzierzon, Helge
Deng, Cecilia
Wang, Yen-Yi
Barron, Lorna
Manako, Kelvina
Bowen, Judith
Foster, Toshi M.
Erridge, Zoe A.
Tiffin, Heather
Waite, Chethi N.
Davies, Kevin M.
Grierson, Ella P.
Laing, William A.
Kirk, Rebecca
Chen, Xiuyin
Wood, Marion
Montefiori, Mirco
Brummell, David A.
Schwinn, Kathy E.
Catanach, Andrew
Fullerton, Christina
Li, Dawei
Meiyalaghan, Sathiyamoorthy
Nieuwenhuizen, Niels
Read, Nicola
Prakash, Roneel
Hunter, Don
Zhang, Huaibi
McKenzie, Marian
Knäbel, Mareike
Harris, Alastair
Allan, Andrew C.
Gleave, Andrew
Chen, Angela
Janssen, Bart J.
Plunkett, Blue
Ampomah-Dwamena, Charles
Voogd, Charlotte
Leif, Davin
Lafferty, Declan
Souleyre, Edwige J. F.
Varkonyi-Gasic, Erika
Gambi, Francesco
Hanley, Jenny
Yao, Jia-Long
Cheung, Joey
David, Karine M.
Warren, Ben
Marsh, Ken
Snowden, Kimberley C.
Lin-Wang, Kui
Brian, Lara
Martinez-Sanchez, Marcela
Wang, Mindy
Ileperuma, Nadeesha
Macnee, Nikolai
Campin, Robert
McAtee, Peter
Drummond, Revel S. M.
Espley, Richard V.
Ireland, Hilary S.
Wu, Rongmei
Atkinson, Ross G.
Karunairetnam, Sakuntala
Bulley, Sean
Chunkath, Shayhan
Hanley, Zac
Storey, Roy
Thrimawithana, Amali H.
Thomson, Susan
David, Charles
Testolin, Raffaele
Huang, Hongwen
Hellens, Roger P.
Schaffer, Robert J.
A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title_full A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title_fullStr A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title_full_unstemmed A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title_short A manually annotated Actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
title_sort manually annotated actinidia chinensis var. chinensis (kiwifruit) genome highlights the challenges associated with draft genomes and gene prediction in plants
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5902842/
https://www.ncbi.nlm.nih.gov/pubmed/29661190
http://dx.doi.org/10.1186/s12864-018-4656-3
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AT ampomahdwamenacharles amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT voogdcharlotte amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT leifdavin amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT laffertydeclan amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT souleyreedwigejf amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT varkonyigasicerika amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT gambifrancesco amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hanleyjenny amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT yaojialong amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT cheungjoey amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davidkarinem amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT warrenben amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT marshken amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT snowdenkimberleyc amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT linwangkui amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT brianlara amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT martinezsanchezmarcela amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT wangmindy amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT ileperumanadeesha amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT macneenikolai amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT campinrobert amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT mcateepeter amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT drummondrevelsm amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT espleyrichardv amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT irelandhilarys amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT wurongmei amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT atkinsonrossg amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT karunairetnamsakuntala amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT bulleysean amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chunkathshayhan amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hanleyzac amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT storeyroy amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT thrimawithanaamalih amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT thomsonsusan amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davidcharles amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT testolinraffaele amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT huanghongwen amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hellensrogerp amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT schafferrobertj amanuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT pilkingtonsarahm manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT crowhurstross manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hilarioelena manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT nardozzasimona manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT fraserlena manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT pengyongyan manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT gunaseelankularajathevan manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT simpsonrobert manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT tahirjibran manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT derolessimonc manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT templetonkerry manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT luozhiwei manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davymarcus manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chengcanhong manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT mcneilagemark manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT scaglionedavide manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT liuyifei manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT zhangqiong manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT datsonpaul manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT desilvanihal manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT gardinersusane manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT bassettheather manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chagnedavid manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT mccallumjohn manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT dzierzonhelge manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT dengcecilia manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT wangyenyi manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT barronlorna manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT manakokelvina manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT bowenjudith manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT fostertoshim manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT erridgezoea manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT tiffinheather manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT waitechethin manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davieskevinm manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT griersonellap manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT laingwilliama manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT kirkrebecca manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chenxiuyin manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT woodmarion manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT montefiorimirco manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT brummelldavida manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT schwinnkathye manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT catanachandrew manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT fullertonchristina manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT lidawei manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT meiyalaghansathiyamoorthy manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT nieuwenhuizenniels manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT readnicola manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT prakashroneel manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hunterdon manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT zhanghuaibi manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT mckenziemarian manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT knabelmareike manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT harrisalastair manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT allanandrewc manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT gleaveandrew manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chenangela manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT janssenbartj manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT plunkettblue manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT ampomahdwamenacharles manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT voogdcharlotte manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT leifdavin manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT laffertydeclan manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT souleyreedwigejf manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT varkonyigasicerika manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT gambifrancesco manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hanleyjenny manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT yaojialong manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT cheungjoey manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davidkarinem manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT warrenben manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT marshken manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT snowdenkimberleyc manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT linwangkui manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT brianlara manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT martinezsanchezmarcela manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT wangmindy manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT ileperumanadeesha manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT macneenikolai manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT campinrobert manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT mcateepeter manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT drummondrevelsm manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT espleyrichardv manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT irelandhilarys manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT wurongmei manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT atkinsonrossg manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT karunairetnamsakuntala manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT bulleysean manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT chunkathshayhan manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hanleyzac manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT storeyroy manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT thrimawithanaamalih manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT thomsonsusan manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT davidcharles manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT testolinraffaele manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT huanghongwen manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT hellensrogerp manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants
AT schafferrobertj manuallyannotatedactinidiachinensisvarchinensiskiwifruitgenomehighlightsthechallengesassociatedwithdraftgenomesandgenepredictioninplants