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A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences

Abstract. The taxonomy of Quercus langbianensis and its relatives in Vietnam and Cambodia have been revised based on evidence obtained from field observations, morphological comparison of herbarium specimens and molecular analyses using both classic and next generation DNA markers. Based on Bayesian...

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Autores principales: Binh, Hoang Thi, Ngoc, Nguyen Van, Tagane, Shuichiro, Toyama, Hironori, Mase, Keiko, Mitsuyuki, Chika, Strijk, Joeri Sergej, Suyama, Yoshihisa, Yahara, Tetsukazu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pensoft Publishers 2018
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904329/
https://www.ncbi.nlm.nih.gov/pubmed/29674926
http://dx.doi.org/10.3897/phytokeys.95.21126
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author Binh, Hoang Thi
Ngoc, Nguyen Van
Tagane, Shuichiro
Toyama, Hironori
Mase, Keiko
Mitsuyuki, Chika
Strijk, Joeri Sergej
Suyama, Yoshihisa
Yahara, Tetsukazu
author_facet Binh, Hoang Thi
Ngoc, Nguyen Van
Tagane, Shuichiro
Toyama, Hironori
Mase, Keiko
Mitsuyuki, Chika
Strijk, Joeri Sergej
Suyama, Yoshihisa
Yahara, Tetsukazu
author_sort Binh, Hoang Thi
collection PubMed
description Abstract. The taxonomy of Quercus langbianensis and its relatives in Vietnam and Cambodia have been revised based on evidence obtained from field observations, morphological comparison of herbarium specimens and molecular analyses using both classic and next generation DNA markers. Based on Bayesian inference using rbcL, matK and ITS regions and Neighbour-joining tree using genome-wide sequences amplified with multiplexed inter-simple sequence repeat (ISSR) primers (MIG-seq), the authors recognised ten species in the complex in Vietnam and Cambodia, three of which are newly described in this paper: Q. baolamensis sp. nov., Q. bidoupensis sp. nov. and Q. honbaensis sp. nov. These new species are all phenotypically similar to Q. langbianensis s. str. in having lanceolate to oblanceolate leaf shape, upper 4–5/6–serrated leaf margin, acute or acuminate leaf apex and bracts of cupule arranged in 5–9 rings but distinguished both morphologically and phylogenetically. In molecular phylogenetic reconstructions, Q. bidoupensis is not close to any other species. In the Bayesian tree, Q. honbaensis is sister to both Q. blaoensis and Q. camusiae that are found in the same locality but morphologically distinct and those three species are sister to Q. langbianensis s. str., while Quercus baolamensis is not sister to Q. langbianensis s. str. in both the Bayesian tree and MIG-seq tree. In addition, Q. cambodiensis and Q. baniensis previously reduced to Q. langbianensis s. lat. have been recognised as distinct species. Six species were in need of lectotypification and that is undertaken herein.
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spelling pubmed-59043292018-04-19 A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences Binh, Hoang Thi Ngoc, Nguyen Van Tagane, Shuichiro Toyama, Hironori Mase, Keiko Mitsuyuki, Chika Strijk, Joeri Sergej Suyama, Yoshihisa Yahara, Tetsukazu PhytoKeys Research Article Abstract. The taxonomy of Quercus langbianensis and its relatives in Vietnam and Cambodia have been revised based on evidence obtained from field observations, morphological comparison of herbarium specimens and molecular analyses using both classic and next generation DNA markers. Based on Bayesian inference using rbcL, matK and ITS regions and Neighbour-joining tree using genome-wide sequences amplified with multiplexed inter-simple sequence repeat (ISSR) primers (MIG-seq), the authors recognised ten species in the complex in Vietnam and Cambodia, three of which are newly described in this paper: Q. baolamensis sp. nov., Q. bidoupensis sp. nov. and Q. honbaensis sp. nov. These new species are all phenotypically similar to Q. langbianensis s. str. in having lanceolate to oblanceolate leaf shape, upper 4–5/6–serrated leaf margin, acute or acuminate leaf apex and bracts of cupule arranged in 5–9 rings but distinguished both morphologically and phylogenetically. In molecular phylogenetic reconstructions, Q. bidoupensis is not close to any other species. In the Bayesian tree, Q. honbaensis is sister to both Q. blaoensis and Q. camusiae that are found in the same locality but morphologically distinct and those three species are sister to Q. langbianensis s. str., while Quercus baolamensis is not sister to Q. langbianensis s. str. in both the Bayesian tree and MIG-seq tree. In addition, Q. cambodiensis and Q. baniensis previously reduced to Q. langbianensis s. lat. have been recognised as distinct species. Six species were in need of lectotypification and that is undertaken herein. Pensoft Publishers 2018-02-07 /pmc/articles/PMC5904329/ /pubmed/29674926 http://dx.doi.org/10.3897/phytokeys.95.21126 Text en Hoang Thi Binh, Nguyen Van Ngoc, Shuichiro Tagane, Hironori Toyama, Keiko Mase, Chika Mitsuyuki, Joeri Sergej Strijk, Yoshihisa Suyama, Tetsukazu Yahara http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Binh, Hoang Thi
Ngoc, Nguyen Van
Tagane, Shuichiro
Toyama, Hironori
Mase, Keiko
Mitsuyuki, Chika
Strijk, Joeri Sergej
Suyama, Yoshihisa
Yahara, Tetsukazu
A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title_full A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title_fullStr A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title_full_unstemmed A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title_short A taxonomic study of Quercus langbianensis complex based on morphology and DNA barcodes of classic and next generation sequences
title_sort taxonomic study of quercus langbianensis complex based on morphology and dna barcodes of classic and next generation sequences
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5904329/
https://www.ncbi.nlm.nih.gov/pubmed/29674926
http://dx.doi.org/10.3897/phytokeys.95.21126
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