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Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus

BACKGROUND: Commonly known as blister beetles or Spanish fly, there are more than 1500 species in the Meloidae family (Hexapoda: Coleoptera: Tenebrionoidea) that produce the potent defensive blistering agent cantharidin. Cantharidin and its derivatives have been used to treat cancers such as liver,...

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Autores principales: Wu, Yuan-Ming, Li, Jiang, Chen, Xiang-Sheng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905561/
https://www.ncbi.nlm.nih.gov/pubmed/29444297
http://dx.doi.org/10.1093/gigascience/giy006
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author Wu, Yuan-Ming
Li, Jiang
Chen, Xiang-Sheng
author_facet Wu, Yuan-Ming
Li, Jiang
Chen, Xiang-Sheng
author_sort Wu, Yuan-Ming
collection PubMed
description BACKGROUND: Commonly known as blister beetles or Spanish fly, there are more than 1500 species in the Meloidae family (Hexapoda: Coleoptera: Tenebrionoidea) that produce the potent defensive blistering agent cantharidin. Cantharidin and its derivatives have been used to treat cancers such as liver, stomach, lung, and esophageal cancers. Hycleus cichorii and Hycleus phaleratus are the most commercially important blister beetles in China due to their ability to biosynthesize this potent vesicant. However, there is a lack of genome reference, which has hindered development of studies on the biosynthesis of cantharidin and a better understanding of its biology and pharmacology. RESULTS: We report 2 draft genomes and quantified gene sets for the blister beetles H. cichorii and H. phaleratus, 2 complex genomes with >72% repeats and approximately 1% heterozygosity, using Illumina sequencing data. An integrated assembly pipeline was performed for assembly, and most of the coding regions were obtained. Benchmarking universal single-copy orthologs (BUSCO) assessment showed that our assembly obtained more than 98% of the Endopterygota universal single-copy orthologs. Comparison analysis showed that the completeness of coding genes in our assembly was comparable to other beetle genomes such as Dendroctonus ponderosae and Agrilus planipennis. Gene annotation yielded 13 813 and 13 725 protein-coding genes in H. cichorii and H. phaleratus, of which approximately 89% were functionally annotated. BUSCO assessment showed that approximately 86% and 84% of the Endopterygota universal single-copy orthologs were annotated completely in these 2 gene sets, whose completeness is comparable to that of D. ponderosae and A. planipennis. CONCLUSIONS: Assembly of both blister beetle genomes provides a valuable resource for future biosynthesis of cantharidin and comparative genomic studies of blister beetles and other beetles.
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spelling pubmed-59055612018-04-23 Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus Wu, Yuan-Ming Li, Jiang Chen, Xiang-Sheng Gigascience Data Note BACKGROUND: Commonly known as blister beetles or Spanish fly, there are more than 1500 species in the Meloidae family (Hexapoda: Coleoptera: Tenebrionoidea) that produce the potent defensive blistering agent cantharidin. Cantharidin and its derivatives have been used to treat cancers such as liver, stomach, lung, and esophageal cancers. Hycleus cichorii and Hycleus phaleratus are the most commercially important blister beetles in China due to their ability to biosynthesize this potent vesicant. However, there is a lack of genome reference, which has hindered development of studies on the biosynthesis of cantharidin and a better understanding of its biology and pharmacology. RESULTS: We report 2 draft genomes and quantified gene sets for the blister beetles H. cichorii and H. phaleratus, 2 complex genomes with >72% repeats and approximately 1% heterozygosity, using Illumina sequencing data. An integrated assembly pipeline was performed for assembly, and most of the coding regions were obtained. Benchmarking universal single-copy orthologs (BUSCO) assessment showed that our assembly obtained more than 98% of the Endopterygota universal single-copy orthologs. Comparison analysis showed that the completeness of coding genes in our assembly was comparable to other beetle genomes such as Dendroctonus ponderosae and Agrilus planipennis. Gene annotation yielded 13 813 and 13 725 protein-coding genes in H. cichorii and H. phaleratus, of which approximately 89% were functionally annotated. BUSCO assessment showed that approximately 86% and 84% of the Endopterygota universal single-copy orthologs were annotated completely in these 2 gene sets, whose completeness is comparable to that of D. ponderosae and A. planipennis. CONCLUSIONS: Assembly of both blister beetle genomes provides a valuable resource for future biosynthesis of cantharidin and comparative genomic studies of blister beetles and other beetles. Oxford University Press 2018-02-10 /pmc/articles/PMC5905561/ /pubmed/29444297 http://dx.doi.org/10.1093/gigascience/giy006 Text en © The Author(s) 2018. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Data Note
Wu, Yuan-Ming
Li, Jiang
Chen, Xiang-Sheng
Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title_full Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title_fullStr Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title_full_unstemmed Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title_short Draft genomes of two blister beetles Hycleus cichorii and Hycleus phaleratus
title_sort draft genomes of two blister beetles hycleus cichorii and hycleus phaleratus
topic Data Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905561/
https://www.ncbi.nlm.nih.gov/pubmed/29444297
http://dx.doi.org/10.1093/gigascience/giy006
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