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Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905569/ https://www.ncbi.nlm.nih.gov/pubmed/29635365 http://dx.doi.org/10.1093/gbe/evy074 |
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author | Holm, Kåre Olav Bækkedal, Cecilie Söderberg, Jenny Johansson Haugen, Peik |
author_facet | Holm, Kåre Olav Bækkedal, Cecilie Söderberg, Jenny Johansson Haugen, Peik |
author_sort | Holm, Kåre Olav |
collection | PubMed |
description | We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes. |
format | Online Article Text |
id | pubmed-5905569 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-59055692018-04-23 Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing Holm, Kåre Olav Bækkedal, Cecilie Söderberg, Jenny Johansson Haugen, Peik Genome Biol Evol Letter We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes. Oxford University Press 2018-04-07 /pmc/articles/PMC5905569/ /pubmed/29635365 http://dx.doi.org/10.1093/gbe/evy074 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Letter Holm, Kåre Olav Bækkedal, Cecilie Söderberg, Jenny Johansson Haugen, Peik Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title_full | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title_fullStr | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title_full_unstemmed | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title_short | Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing |
title_sort | complete genome sequences of seven vibrio anguillarum strains as derived from pacbio sequencing |
topic | Letter |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905569/ https://www.ncbi.nlm.nih.gov/pubmed/29635365 http://dx.doi.org/10.1093/gbe/evy074 |
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