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Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing

We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of...

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Autores principales: Holm, Kåre Olav, Bækkedal, Cecilie, Söderberg, Jenny Johansson, Haugen, Peik
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905569/
https://www.ncbi.nlm.nih.gov/pubmed/29635365
http://dx.doi.org/10.1093/gbe/evy074
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author Holm, Kåre Olav
Bækkedal, Cecilie
Söderberg, Jenny Johansson
Haugen, Peik
author_facet Holm, Kåre Olav
Bækkedal, Cecilie
Söderberg, Jenny Johansson
Haugen, Peik
author_sort Holm, Kåre Olav
collection PubMed
description We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes.
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spelling pubmed-59055692018-04-23 Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing Holm, Kåre Olav Bækkedal, Cecilie Söderberg, Jenny Johansson Haugen, Peik Genome Biol Evol Letter We report here the complete genome sequences of seven Vibrio anguillarum strains isolated from multiple geographic locations, thus increasing the total number of genomes of finished quality to 11. The genomes were de novo assembled from long-sequence PacBio reads. Including draft genomes, a total of 44 V. anguillarum genomes are currently available in the genome databases. They represent an important resource in the study of, for example, genetic variations and for identifying virulence determinants. In this article, we present the genomes and basic genome comparisons of the 11 complete genomes, including a BRIG analysis, and pan genome calculation. We also describe some structural features of superintegrons on chromosome 2 s, and associated insertion sequence (IS) elements, including 18 new ISs (ISVa3 − ISVa20), both of importance in the complement of V. anguillarum genomes. Oxford University Press 2018-04-07 /pmc/articles/PMC5905569/ /pubmed/29635365 http://dx.doi.org/10.1093/gbe/evy074 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Letter
Holm, Kåre Olav
Bækkedal, Cecilie
Söderberg, Jenny Johansson
Haugen, Peik
Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title_full Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title_fullStr Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title_full_unstemmed Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title_short Complete Genome Sequences of Seven Vibrio anguillarum Strains as Derived from PacBio Sequencing
title_sort complete genome sequences of seven vibrio anguillarum strains as derived from pacbio sequencing
topic Letter
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5905569/
https://www.ncbi.nlm.nih.gov/pubmed/29635365
http://dx.doi.org/10.1093/gbe/evy074
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