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A Versatile Vector Toolkit for Functional Analysis of Rice Genes

BACKGROUND: Rice (Oryza sativa) is the main food for half of the world’s population, and is considered the model for molecular biology studies of monocotyledon species. Although the rice genome was completely sequenced about 15 years ago, the function of most rice genes is still unknown. RESULTS: In...

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Detalles Bibliográficos
Autores principales: He, Feng, Zhang, Fan, Sun, Wenxian, Ning, Yuese, Wang, Guo-Liang
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5910328/
https://www.ncbi.nlm.nih.gov/pubmed/29679176
http://dx.doi.org/10.1186/s12284-018-0220-7
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author He, Feng
Zhang, Fan
Sun, Wenxian
Ning, Yuese
Wang, Guo-Liang
author_facet He, Feng
Zhang, Fan
Sun, Wenxian
Ning, Yuese
Wang, Guo-Liang
author_sort He, Feng
collection PubMed
description BACKGROUND: Rice (Oryza sativa) is the main food for half of the world’s population, and is considered the model for molecular biology studies of monocotyledon species. Although the rice genome was completely sequenced about 15 years ago, the function of most rice genes is still unknown. RESULTS: In this study, we developed a vector toolkit that contains 42 vectors for transient expression studies in rice protoplasts and stable expression analysis in transgenic rice. These vectors have been successfully used to study protein subcellular localization, protein-protein interaction, gene overexpression, and the CRISPR/Cas9-mediated gene editing. A novel feature of these vectors is that they contain a universal multiple cloning site, which enables more than 99% of the rice coding sequences to be conveniently transferred between vectors. CONCLUSIONS: The versatile vectors represent a highly efficient and high-throughput toolkit for functional analysis of rice genes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12284-018-0220-7) contains supplementary material, which is available to authorized users.
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spelling pubmed-59103282018-04-24 A Versatile Vector Toolkit for Functional Analysis of Rice Genes He, Feng Zhang, Fan Sun, Wenxian Ning, Yuese Wang, Guo-Liang Rice (N Y) Original Article BACKGROUND: Rice (Oryza sativa) is the main food for half of the world’s population, and is considered the model for molecular biology studies of monocotyledon species. Although the rice genome was completely sequenced about 15 years ago, the function of most rice genes is still unknown. RESULTS: In this study, we developed a vector toolkit that contains 42 vectors for transient expression studies in rice protoplasts and stable expression analysis in transgenic rice. These vectors have been successfully used to study protein subcellular localization, protein-protein interaction, gene overexpression, and the CRISPR/Cas9-mediated gene editing. A novel feature of these vectors is that they contain a universal multiple cloning site, which enables more than 99% of the rice coding sequences to be conveniently transferred between vectors. CONCLUSIONS: The versatile vectors represent a highly efficient and high-throughput toolkit for functional analysis of rice genes. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1186/s12284-018-0220-7) contains supplementary material, which is available to authorized users. Springer US 2018-04-20 /pmc/articles/PMC5910328/ /pubmed/29679176 http://dx.doi.org/10.1186/s12284-018-0220-7 Text en © The Author(s). 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Original Article
He, Feng
Zhang, Fan
Sun, Wenxian
Ning, Yuese
Wang, Guo-Liang
A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title_full A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title_fullStr A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title_full_unstemmed A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title_short A Versatile Vector Toolkit for Functional Analysis of Rice Genes
title_sort versatile vector toolkit for functional analysis of rice genes
topic Original Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5910328/
https://www.ncbi.nlm.nih.gov/pubmed/29679176
http://dx.doi.org/10.1186/s12284-018-0220-7
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