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Quantitative optical mapping of two-dimensional materials

The pace of two-dimensional materials (2DM) research has been greatly accelerated by the ability to identify exfoliated thicknesses down to a monolayer from their optical contrast. Since this process requires time-consuming and error-prone manual assignment to avoid false-positives from image featur...

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Autores principales: Jessen, Bjarke S., Whelan, Patrick R., Mackenzie, David M. A., Luo, Birong, Thomsen, Joachim D., Gammelgaard, Lene, Booth, Timothy J., Bøggild, Peter
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5913130/
https://www.ncbi.nlm.nih.gov/pubmed/29686410
http://dx.doi.org/10.1038/s41598-018-23922-1
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author Jessen, Bjarke S.
Whelan, Patrick R.
Mackenzie, David M. A.
Luo, Birong
Thomsen, Joachim D.
Gammelgaard, Lene
Booth, Timothy J.
Bøggild, Peter
author_facet Jessen, Bjarke S.
Whelan, Patrick R.
Mackenzie, David M. A.
Luo, Birong
Thomsen, Joachim D.
Gammelgaard, Lene
Booth, Timothy J.
Bøggild, Peter
author_sort Jessen, Bjarke S.
collection PubMed
description The pace of two-dimensional materials (2DM) research has been greatly accelerated by the ability to identify exfoliated thicknesses down to a monolayer from their optical contrast. Since this process requires time-consuming and error-prone manual assignment to avoid false-positives from image features with similar contrast, efforts towards fast and reliable automated assignments schemes is essential. We show that by modelling the expected 2DM contrast in digitally captured images, we can automatically identify candidate regions of 2DM. More importantly, we show a computationally-light machine vision strategy for eliminating false-positives from this set of 2DM candidates through the combined use of binary thresholding, opening and closing filters, and shape-analysis from edge detection. Calculation of data pyramids for arbitrarily high-resolution optical coverage maps of two-dimensional materials produced in this way allows the real-time presentation and processing of this image data in a zoomable interface, enabling large datasets to be explored and analysed with ease. The result is that a standard optical microscope with CCD camera can be used as an analysis tool able to accurately determine the coverage, residue/contamination concentration, and layer number for a wide range of presented 2DMs.
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spelling pubmed-59131302018-04-30 Quantitative optical mapping of two-dimensional materials Jessen, Bjarke S. Whelan, Patrick R. Mackenzie, David M. A. Luo, Birong Thomsen, Joachim D. Gammelgaard, Lene Booth, Timothy J. Bøggild, Peter Sci Rep Article The pace of two-dimensional materials (2DM) research has been greatly accelerated by the ability to identify exfoliated thicknesses down to a monolayer from their optical contrast. Since this process requires time-consuming and error-prone manual assignment to avoid false-positives from image features with similar contrast, efforts towards fast and reliable automated assignments schemes is essential. We show that by modelling the expected 2DM contrast in digitally captured images, we can automatically identify candidate regions of 2DM. More importantly, we show a computationally-light machine vision strategy for eliminating false-positives from this set of 2DM candidates through the combined use of binary thresholding, opening and closing filters, and shape-analysis from edge detection. Calculation of data pyramids for arbitrarily high-resolution optical coverage maps of two-dimensional materials produced in this way allows the real-time presentation and processing of this image data in a zoomable interface, enabling large datasets to be explored and analysed with ease. The result is that a standard optical microscope with CCD camera can be used as an analysis tool able to accurately determine the coverage, residue/contamination concentration, and layer number for a wide range of presented 2DMs. Nature Publishing Group UK 2018-04-23 /pmc/articles/PMC5913130/ /pubmed/29686410 http://dx.doi.org/10.1038/s41598-018-23922-1 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Jessen, Bjarke S.
Whelan, Patrick R.
Mackenzie, David M. A.
Luo, Birong
Thomsen, Joachim D.
Gammelgaard, Lene
Booth, Timothy J.
Bøggild, Peter
Quantitative optical mapping of two-dimensional materials
title Quantitative optical mapping of two-dimensional materials
title_full Quantitative optical mapping of two-dimensional materials
title_fullStr Quantitative optical mapping of two-dimensional materials
title_full_unstemmed Quantitative optical mapping of two-dimensional materials
title_short Quantitative optical mapping of two-dimensional materials
title_sort quantitative optical mapping of two-dimensional materials
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5913130/
https://www.ncbi.nlm.nih.gov/pubmed/29686410
http://dx.doi.org/10.1038/s41598-018-23922-1
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