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Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium

Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidati...

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Autores principales: Silva, Paula Renata Alves da, Simões-Araújo, Jean Luiz, Vidal, Márcia Soares, Cruz, Leonardo Magalhães, Souza, Emanuel Maltempi de, Baldani, José Ivo
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2017
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914139/
https://www.ncbi.nlm.nih.gov/pubmed/29122479
http://dx.doi.org/10.1016/j.bjm.2017.07.005
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author Silva, Paula Renata Alves da
Simões-Araújo, Jean Luiz
Vidal, Márcia Soares
Cruz, Leonardo Magalhães
Souza, Emanuel Maltempi de
Baldani, José Ivo
author_facet Silva, Paula Renata Alves da
Simões-Araújo, Jean Luiz
Vidal, Márcia Soares
Cruz, Leonardo Magalhães
Souza, Emanuel Maltempi de
Baldani, José Ivo
author_sort Silva, Paula Renata Alves da
collection PubMed
description Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association.
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spelling pubmed-59141392018-04-27 Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium Silva, Paula Renata Alves da Simões-Araújo, Jean Luiz Vidal, Márcia Soares Cruz, Leonardo Magalhães Souza, Emanuel Maltempi de Baldani, José Ivo Braz J Microbiol Genome Announcement Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. Elsevier 2017-10-18 /pmc/articles/PMC5914139/ /pubmed/29122479 http://dx.doi.org/10.1016/j.bjm.2017.07.005 Text en © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Genome Announcement
Silva, Paula Renata Alves da
Simões-Araújo, Jean Luiz
Vidal, Márcia Soares
Cruz, Leonardo Magalhães
Souza, Emanuel Maltempi de
Baldani, José Ivo
Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title_full Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title_fullStr Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title_full_unstemmed Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title_short Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
title_sort draft genome sequence of paraburkholderia tropica ppe8 strain, a sugarcane endophytic diazotrophic bacterium
topic Genome Announcement
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914139/
https://www.ncbi.nlm.nih.gov/pubmed/29122479
http://dx.doi.org/10.1016/j.bjm.2017.07.005
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