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Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium
Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidati...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Elsevier
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914139/ https://www.ncbi.nlm.nih.gov/pubmed/29122479 http://dx.doi.org/10.1016/j.bjm.2017.07.005 |
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author | Silva, Paula Renata Alves da Simões-Araújo, Jean Luiz Vidal, Márcia Soares Cruz, Leonardo Magalhães Souza, Emanuel Maltempi de Baldani, José Ivo |
author_facet | Silva, Paula Renata Alves da Simões-Araújo, Jean Luiz Vidal, Márcia Soares Cruz, Leonardo Magalhães Souza, Emanuel Maltempi de Baldani, José Ivo |
author_sort | Silva, Paula Renata Alves da |
collection | PubMed |
description | Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. |
format | Online Article Text |
id | pubmed-5914139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Elsevier |
record_format | MEDLINE/PubMed |
spelling | pubmed-59141392018-04-27 Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium Silva, Paula Renata Alves da Simões-Araújo, Jean Luiz Vidal, Márcia Soares Cruz, Leonardo Magalhães Souza, Emanuel Maltempi de Baldani, José Ivo Braz J Microbiol Genome Announcement Paraburkholderia tropica (syn Burkholderia tropica) are nitrogen-fixing bacteria commonly found in sugarcane. The Paraburkholderia tropica strain Ppe8 is part of the sugarcane inoculant consortium that has a beneficial effect on yield. Here, we report a draft genome sequence of this strain elucidating the mechanisms involved in its interaction mainly with Poaceae. A genome size of approximately 8.75 Mb containing 7844 protein coding genes distributed in 526 subsystems was de novo assembled with ABySS and annotated by RAST. Genes related to the nitrogen fixation process, the secretion systems (I, II, III, IV, and VI), and related to a variety of metabolic traits, such as metabolism of carbohydrates, amino acids, vitamins, and proteins, were detected, suggesting a broad metabolic capacity and possible adaptation to plant association. Elsevier 2017-10-18 /pmc/articles/PMC5914139/ /pubmed/29122479 http://dx.doi.org/10.1016/j.bjm.2017.07.005 Text en © 2017 Sociedade Brasileira de Microbiologia. Published by Elsevier Editora Ltda. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Genome Announcement Silva, Paula Renata Alves da Simões-Araújo, Jean Luiz Vidal, Márcia Soares Cruz, Leonardo Magalhães Souza, Emanuel Maltempi de Baldani, José Ivo Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title | Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title_full | Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title_fullStr | Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title_full_unstemmed | Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title_short | Draft genome sequence of Paraburkholderia tropica Ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
title_sort | draft genome sequence of paraburkholderia tropica ppe8 strain, a sugarcane endophytic diazotrophic bacterium |
topic | Genome Announcement |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914139/ https://www.ncbi.nlm.nih.gov/pubmed/29122479 http://dx.doi.org/10.1016/j.bjm.2017.07.005 |
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