Cargando…

The effects of sequencing platforms on phylogenetic resolution in 16 S rRNA gene profiling of human feces

High-quality and high-throughput sequencing technologies are required for therapeutic and diagnostic analyses of human gut microbiota. Here, we evaluated the advantages and disadvantages of the various commercial sequencing platforms for studying human gut microbiota. We generated fecal bacterial se...

Descripción completa

Detalles Bibliográficos
Autores principales:	Whon, Tae Woong, Chung, Won-Hyong, Lim, Mi Young, Song, Eun-Ji, Kim, Pil Soo, Hyun, Dong-Wook, Shin, Na-Ri, Bae, Jin-Woo, Nam, Young-Do
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Nature Publishing Group 2018
Materias:	Data Descriptor
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914283/ https://www.ncbi.nlm.nih.gov/pubmed/29688220 http://dx.doi.org/10.1038/sdata.2018.68

Ejemplares similares

Cydrasil 3, a curated 16S rRNA gene reference package and web app for cyanobacterial phylogenetic placement
por: Roush, Daniel, et al.
Publicado: (2021)

The effect of 16S rRNA region choice on bacterial community metabarcoding results
por: Bukin, Yu. S., et al.
Publicado: (2019)

LogMPIE, pan-India profiling of the human gut microbiome using 16S rRNA sequencing
por: Dubey, Ashok Kumar, et al.
Publicado: (2018)

Comprehensive 16S rRNA and metagenomic data from the gut microbiome of aging and rejuvenation mouse models
por: Shin, Jongoh, et al.
Publicado: (2022)

Longitudinal 16S rRNA data derived from limb regenerative tissue samples of axolotl Ambystoma mexicanum
por: Demircan, Turan, et al.
Publicado: (2019)

Curated and harmonized gut microbiome 16S rRNA amplicon data from dietary fiber intervention studies in humans
por: Rodriguez, Cynthia I., et al.
Publicado: (2023)

A georeferenced rRNA amplicon database of aquatic microbiomes from South America
por: Metz, Sebastian, et al.
Publicado: (2022)

High resolution synthetic residential energy use profiles for the United States
por: Thorve, Swapna, et al.
Publicado: (2023)

High-resolution mapping of spatial heterogeneity in ice wedge polygon geomorphology near Prudhoe Bay, Alaska
por: Abolt, Charles J., et al.
Publicado: (2020)

High-resolution calibrated and validated Synthetic Aperture Radar Ocean surface wind data around Australia
por: Khan, Salman, et al.
Publicado: (2023)

Paired rRNA-depleted and polyA-selected RNA sequencing data and supporting multi-omics data from human T cells
por: Chen, Li, et al.
Publicado: (2020)

Global-scale phylogenetic linguistic inference from lexical resources
por: Jäger, Gerhard
Publicado: (2018)

The Icelandic 16-electrode electrohysterogram database
por: Alexandersson, Asgeir, et al.
Publicado: (2015)

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.
por: Kang, Won-Hee, et al.
Publicado: (2020)

Two long read-based genome assembly and annotation of polyploidy woody plants, Hibiscus syriacus L. using PacBio and Nanopore platforms
por: Koo, Hyunjin, et al.
Publicado: (2023)

A curated database of cyanobacterial strains relevant for modern taxonomy and phylogenetic studies
por: Ramos, Vitor, et al.
Publicado: (2017)

Climatologies at high resolution for the earth’s land surface areas
por: Karger, Dirk Nikolaus, et al.
Publicado: (2017)

Geopositioning time series from offshore platforms in the Adriatic Sea
por: Palano, Mimmo, et al.
Publicado: (2020)

Benchmarking second and third-generation sequencing platforms for microbial metagenomics
por: Meslier, Victoria, et al.
Publicado: (2022)

Hyperlocal environmental data with a mobile platform in urban environments
por: Wang, An, et al.
Publicado: (2023)

WOODIV, a database of occurrences, functional traits, and phylogenetic data for all Euro-Mediterranean trees
por: Monnet, Anne-Christine, et al.
Publicado: (2021)

High-resolution computed tomography reconstructions of invertebrate burrow systems
por: Hale, Rachel, et al.
Publicado: (2015)

High resolution global gridded data for use in population studies
por: Lloyd, Christopher T., et al.
Publicado: (2017)

A high-resolution map of reactive nitrogen inputs to China
por: Wang, Sitong, et al.
Publicado: (2020)

High spatial resolution dataset of La Mobilière insurance customers
por: Battiston, Alice, et al.
Publicado: (2022)

Global hydro-environmental lake characteristics at high spatial resolution
por: Lehner, Bernhard, et al.
Publicado: (2022)

High-resolution circa-2020 map of urban lakes in China
por: Song, Chunqiao, et al.
Publicado: (2022)

High-resolution maps of critical loads for sulfur and nitrogen in China
por: Ge, Xiaodong, et al.
Publicado: (2023)

Materials informatics platform with three dimensional structures, workflow and thermoelectric applications
por: Yao, Mingjia, et al.
Publicado: (2021)

Cross-platform dataset of multiplex fluorescent cellular object image annotations
por: Aleynick, Nathaniel, et al.
Publicado: (2023)

High resolution multi-facies realizations of sedimentary reservoir and aquifer analogs
por: Bayer, Peter, et al.
Publicado: (2015)

EU-Forest, a high-resolution tree occurrence dataset for Europe
por: Mauri, Achille, et al.
Publicado: (2017)

High-resolution near real-time drought monitoring in South Asia
por: Aadhar, Saran, et al.
Publicado: (2017)

High resolution annual average air pollution concentration maps for the Netherlands
por: Schmitz, Oliver, et al.
Publicado: (2019)

UASOL, a large-scale high-resolution outdoor stereo dataset
por: Bauer, Zuria, et al.
Publicado: (2019)

Disambiguation of patent inventors and assignees using high-resolution geolocation data
por: Morrison, Greg, et al.
Publicado: (2017)

High resolution temporal profiles in the Emissions Database for Global Atmospheric Research
por: Crippa, Monica, et al.
Publicado: (2020)

Depth-to-bedrock map of China at a spatial resolution of 100 meters
por: Yan, Fapeng, et al.
Publicado: (2020)

A database of high-resolution MS/MS spectra for lichen metabolites
por: Olivier-Jimenez, Damien, et al.
Publicado: (2019)

Global forest management data for 2015 at a 100 m resolution
por: Lesiv, Myroslava, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_u0u5r43dp06pf4la1lbiie9mpi