Cargando…

Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia

Despite a long history of mosquito-borne virus epidemics in the Americas, the impact of the Zika virus (ZIKV) epidemic of 2015–2016 was unexpected. The need for scientifically informed decision-making is driving research to understand the emergence and spread of ZIKV. To support that research, we as...

Descripción completa

Detalles Bibliográficos
Autores principales: Siraj, Amir S., Rodriguez-Barraquer, Isabel, Barker, Christopher M., Tejedor-Garavito, Natalia, Harding, Dennis, Lorton, Christopher, Lukacevic, Dejan, Oates, Gene, Espana, Guido, Kraemer, Moritz U.G., Manore, Carrie, Johansson, Michael A., Tatem, Andrew J., Reiner, Robert C., Perkins, T. Alex
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914286/
https://www.ncbi.nlm.nih.gov/pubmed/29688216
http://dx.doi.org/10.1038/sdata.2018.73
_version_ 1783316687191277568
author Siraj, Amir S.
Rodriguez-Barraquer, Isabel
Barker, Christopher M.
Tejedor-Garavito, Natalia
Harding, Dennis
Lorton, Christopher
Lukacevic, Dejan
Oates, Gene
Espana, Guido
Kraemer, Moritz U.G.
Manore, Carrie
Johansson, Michael A.
Tatem, Andrew J.
Reiner, Robert C.
Perkins, T. Alex
author_facet Siraj, Amir S.
Rodriguez-Barraquer, Isabel
Barker, Christopher M.
Tejedor-Garavito, Natalia
Harding, Dennis
Lorton, Christopher
Lukacevic, Dejan
Oates, Gene
Espana, Guido
Kraemer, Moritz U.G.
Manore, Carrie
Johansson, Michael A.
Tatem, Andrew J.
Reiner, Robert C.
Perkins, T. Alex
author_sort Siraj, Amir S.
collection PubMed
description Despite a long history of mosquito-borne virus epidemics in the Americas, the impact of the Zika virus (ZIKV) epidemic of 2015–2016 was unexpected. The need for scientifically informed decision-making is driving research to understand the emergence and spread of ZIKV. To support that research, we assembled a data set of key covariates for modeling ZIKV transmission dynamics in Colombia, where ZIKV transmission was widespread and the government made incidence data publically available. On a weekly basis between January 1, 2014 and October 1, 2016 at three administrative levels, we collated spatiotemporal Zika incidence data, nine environmental variables, and demographic data into a single downloadable database. These new datasets and those we identified, processed, and assembled at comparable spatial and temporal resolutions will save future researchers considerable time and effort in performing these data processing steps, enabling them to focus instead on extracting epidemiological insights from this important data set. Similar approaches could prove useful for filling data gaps to enable epidemiological analyses of future disease emergence events.
format Online
Article
Text
id pubmed-5914286
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group
record_format MEDLINE/PubMed
spelling pubmed-59142862018-05-10 Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia Siraj, Amir S. Rodriguez-Barraquer, Isabel Barker, Christopher M. Tejedor-Garavito, Natalia Harding, Dennis Lorton, Christopher Lukacevic, Dejan Oates, Gene Espana, Guido Kraemer, Moritz U.G. Manore, Carrie Johansson, Michael A. Tatem, Andrew J. Reiner, Robert C. Perkins, T. Alex Sci Data Data Descriptor Despite a long history of mosquito-borne virus epidemics in the Americas, the impact of the Zika virus (ZIKV) epidemic of 2015–2016 was unexpected. The need for scientifically informed decision-making is driving research to understand the emergence and spread of ZIKV. To support that research, we assembled a data set of key covariates for modeling ZIKV transmission dynamics in Colombia, where ZIKV transmission was widespread and the government made incidence data publically available. On a weekly basis between January 1, 2014 and October 1, 2016 at three administrative levels, we collated spatiotemporal Zika incidence data, nine environmental variables, and demographic data into a single downloadable database. These new datasets and those we identified, processed, and assembled at comparable spatial and temporal resolutions will save future researchers considerable time and effort in performing these data processing steps, enabling them to focus instead on extracting epidemiological insights from this important data set. Similar approaches could prove useful for filling data gaps to enable epidemiological analyses of future disease emergence events. Nature Publishing Group 2018-04-24 /pmc/articles/PMC5914286/ /pubmed/29688216 http://dx.doi.org/10.1038/sdata.2018.73 Text en Copyright © 2018, The Author(s) http://creativecommons.org/licenses/by/4.0/ Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/ The Creative Commons Public Domain Dedication waiver http://creativecommons.org/publicdomain/zero/1.0/ applies to the metadata files made available in this article.
spellingShingle Data Descriptor
Siraj, Amir S.
Rodriguez-Barraquer, Isabel
Barker, Christopher M.
Tejedor-Garavito, Natalia
Harding, Dennis
Lorton, Christopher
Lukacevic, Dejan
Oates, Gene
Espana, Guido
Kraemer, Moritz U.G.
Manore, Carrie
Johansson, Michael A.
Tatem, Andrew J.
Reiner, Robert C.
Perkins, T. Alex
Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title_full Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title_fullStr Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title_full_unstemmed Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title_short Spatiotemporal incidence of Zika and associated environmental drivers for the 2015-2016 epidemic in Colombia
title_sort spatiotemporal incidence of zika and associated environmental drivers for the 2015-2016 epidemic in colombia
topic Data Descriptor
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5914286/
https://www.ncbi.nlm.nih.gov/pubmed/29688216
http://dx.doi.org/10.1038/sdata.2018.73
work_keys_str_mv AT sirajamirs spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT rodriguezbarraquerisabel spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT barkerchristopherm spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT tejedorgaravitonatalia spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT hardingdennis spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT lortonchristopher spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT lukacevicdejan spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT oatesgene spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT espanaguido spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT kraemermoritzug spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT manorecarrie spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT johanssonmichaela spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT tatemandrewj spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT reinerrobertc spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia
AT perkinstalex spatiotemporalincidenceofzikaandassociatedenvironmentaldriversforthe20152016epidemicincolombia