Cargando…
Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disea...
Autores principales: | , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cambridge University Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915807/ https://www.ncbi.nlm.nih.gov/pubmed/29707261 http://dx.doi.org/10.1017/cts.2017.311 |
_version_ | 1783316928489586688 |
---|---|
author | Ward, Alistair Karren, Mary A. Di Sera, Tonya Miller, Chase Velinder, Matt Qiao, Yi Filloux, Francis M. Ostrander, Betsy Butterfield, Russell Bonkowsky, Joshua L. Dere, Willard Marth, Gabor T. |
author_facet | Ward, Alistair Karren, Mary A. Di Sera, Tonya Miller, Chase Velinder, Matt Qiao, Yi Filloux, Francis M. Ostrander, Betsy Butterfield, Russell Bonkowsky, Joshua L. Dere, Willard Marth, Gabor T. |
author_sort | Ward, Alistair |
collection | PubMed |
description | INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disease-causing variant in a patient with early infantile epileptic encephalopathy with prior nondiagnostic genetic testing. CONCLUSIONS: Iobio tools can be used by clinicians to rapidly identify disease-causing variants from genomic patient sequencing data. |
format | Online Article Text |
id | pubmed-5915807 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Cambridge University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-59158072018-04-27 Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools Ward, Alistair Karren, Mary A. Di Sera, Tonya Miller, Chase Velinder, Matt Qiao, Yi Filloux, Francis M. Ostrander, Betsy Butterfield, Russell Bonkowsky, Joshua L. Dere, Willard Marth, Gabor T. J Clin Transl Sci Translational Research, Design and Analysis INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disease-causing variant in a patient with early infantile epileptic encephalopathy with prior nondiagnostic genetic testing. CONCLUSIONS: Iobio tools can be used by clinicians to rapidly identify disease-causing variants from genomic patient sequencing data. Cambridge University Press 2018-04-23 /pmc/articles/PMC5915807/ /pubmed/29707261 http://dx.doi.org/10.1017/cts.2017.311 Text en © The Association for Clinical and Translational Science 2018 http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is unaltered and is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use or in order to create a derivative work. |
spellingShingle | Translational Research, Design and Analysis Ward, Alistair Karren, Mary A. Di Sera, Tonya Miller, Chase Velinder, Matt Qiao, Yi Filloux, Francis M. Ostrander, Betsy Butterfield, Russell Bonkowsky, Joshua L. Dere, Willard Marth, Gabor T. Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title | Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title_full | Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title_fullStr | Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title_full_unstemmed | Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title_short | Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
title_sort | rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools |
topic | Translational Research, Design and Analysis |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915807/ https://www.ncbi.nlm.nih.gov/pubmed/29707261 http://dx.doi.org/10.1017/cts.2017.311 |
work_keys_str_mv | AT wardalistair rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT karrenmarya rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT diseratonya rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT millerchase rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT velindermatt rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT qiaoyi rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT fillouxfrancism rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT ostranderbetsy rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT butterfieldrussell rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT bonkowskyjoshual rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT derewillard rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools AT marthgabort rapidclinicaldiagnosticvariantinvestigationofgenomicpatientsequencingdatawithiobiowebtools |