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Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools

INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disea...

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Autores principales: Ward, Alistair, Karren, Mary A., Di Sera, Tonya, Miller, Chase, Velinder, Matt, Qiao, Yi, Filloux, Francis M., Ostrander, Betsy, Butterfield, Russell, Bonkowsky, Joshua L., Dere, Willard, Marth, Gabor T.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cambridge University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915807/
https://www.ncbi.nlm.nih.gov/pubmed/29707261
http://dx.doi.org/10.1017/cts.2017.311
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author Ward, Alistair
Karren, Mary A.
Di Sera, Tonya
Miller, Chase
Velinder, Matt
Qiao, Yi
Filloux, Francis M.
Ostrander, Betsy
Butterfield, Russell
Bonkowsky, Joshua L.
Dere, Willard
Marth, Gabor T.
author_facet Ward, Alistair
Karren, Mary A.
Di Sera, Tonya
Miller, Chase
Velinder, Matt
Qiao, Yi
Filloux, Francis M.
Ostrander, Betsy
Butterfield, Russell
Bonkowsky, Joshua L.
Dere, Willard
Marth, Gabor T.
author_sort Ward, Alistair
collection PubMed
description INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disease-causing variant in a patient with early infantile epileptic encephalopathy with prior nondiagnostic genetic testing. CONCLUSIONS: Iobio tools can be used by clinicians to rapidly identify disease-causing variants from genomic patient sequencing data.
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spelling pubmed-59158072018-04-27 Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools Ward, Alistair Karren, Mary A. Di Sera, Tonya Miller, Chase Velinder, Matt Qiao, Yi Filloux, Francis M. Ostrander, Betsy Butterfield, Russell Bonkowsky, Joshua L. Dere, Willard Marth, Gabor T. J Clin Transl Sci Translational Research, Design and Analysis INTRODUCTION: Computational analysis of genome or exome sequences may improve inherited disease diagnosis, but is costly and time-consuming. METHODS: We describe the use of iobio, a web-based tool suite for intuitive, real-time genome diagnostic analyses. RESULTS: We used iobio to identify the disease-causing variant in a patient with early infantile epileptic encephalopathy with prior nondiagnostic genetic testing. CONCLUSIONS: Iobio tools can be used by clinicians to rapidly identify disease-causing variants from genomic patient sequencing data. Cambridge University Press 2018-04-23 /pmc/articles/PMC5915807/ /pubmed/29707261 http://dx.doi.org/10.1017/cts.2017.311 Text en © The Association for Clinical and Translational Science 2018 http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article, distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivatives licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is unaltered and is properly cited. The written permission of Cambridge University Press must be obtained for commercial re-use or in order to create a derivative work.
spellingShingle Translational Research, Design and Analysis
Ward, Alistair
Karren, Mary A.
Di Sera, Tonya
Miller, Chase
Velinder, Matt
Qiao, Yi
Filloux, Francis M.
Ostrander, Betsy
Butterfield, Russell
Bonkowsky, Joshua L.
Dere, Willard
Marth, Gabor T.
Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title_full Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title_fullStr Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title_full_unstemmed Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title_short Rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
title_sort rapid clinical diagnostic variant investigation of genomic patient sequencing data with iobio web tools
topic Translational Research, Design and Analysis
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5915807/
https://www.ncbi.nlm.nih.gov/pubmed/29707261
http://dx.doi.org/10.1017/cts.2017.311
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