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De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts
Burying beetles (Nicrophorus spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an a...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Ivyspring International Publisher
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5916875/ https://www.ncbi.nlm.nih.gov/pubmed/29707046 http://dx.doi.org/10.7150/jgen.24228 |
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author | Won, Harim I. Schulze, Thomas T. Clement, Emalie J. Watson, Gabrielle F. Watson, Sean M. Warner, Rosalie C. Ramler, Elizabeth A. M. Witte, Elias J. Schoenbeck, Mark A. Rauter, Claudia M. Davis, Paul H. |
author_facet | Won, Harim I. Schulze, Thomas T. Clement, Emalie J. Watson, Gabrielle F. Watson, Sean M. Warner, Rosalie C. Ramler, Elizabeth A. M. Witte, Elias J. Schoenbeck, Mark A. Rauter, Claudia M. Davis, Paul H. |
author_sort | Won, Harim I. |
collection | PubMed |
description | Burying beetles (Nicrophorus spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an assembled transcriptome, relatively little is known concerning the molecular biology of these beetles. This work details the assembly and analysis of the Nicrophorus orbicollis transcriptome at multiple developmental stages. RNA-Seq reads were obtained by next-generation sequencing and the transcriptome was assembled using the Trinity assembler. Validation of the assembly was performed by functional characterization using Gene Ontology (GO), Eukaryotic Orthologous Groups (KOG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. Differential expression analysis highlights developmental stage-specific expression patterns, and immunity-related transcripts are discussed. The data presented provides a valuable molecular resource to aid further investigation into immunocompetence throughout this organism's sexual development. |
format | Online Article Text |
id | pubmed-5916875 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Ivyspring International Publisher |
record_format | MEDLINE/PubMed |
spelling | pubmed-59168752018-04-27 De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts Won, Harim I. Schulze, Thomas T. Clement, Emalie J. Watson, Gabrielle F. Watson, Sean M. Warner, Rosalie C. Ramler, Elizabeth A. M. Witte, Elias J. Schoenbeck, Mark A. Rauter, Claudia M. Davis, Paul H. J Genomics Research Paper Burying beetles (Nicrophorus spp.) are among the relatively few insects that provide parental care while not belonging to the eusocial insects such as ants or bees. This behavior incurs energy costs as evidenced by immune deficits and shorter life-spans in reproducing beetles. In the absence of an assembled transcriptome, relatively little is known concerning the molecular biology of these beetles. This work details the assembly and analysis of the Nicrophorus orbicollis transcriptome at multiple developmental stages. RNA-Seq reads were obtained by next-generation sequencing and the transcriptome was assembled using the Trinity assembler. Validation of the assembly was performed by functional characterization using Gene Ontology (GO), Eukaryotic Orthologous Groups (KOG), and Kyoto Encyclopedia of Genes and Genomes (KEGG) analyses. Differential expression analysis highlights developmental stage-specific expression patterns, and immunity-related transcripts are discussed. The data presented provides a valuable molecular resource to aid further investigation into immunocompetence throughout this organism's sexual development. Ivyspring International Publisher 2018-04-10 /pmc/articles/PMC5916875/ /pubmed/29707046 http://dx.doi.org/10.7150/jgen.24228 Text en © Ivyspring International Publisher This is an open access article distributed under the terms of the Creative Commons Attribution (CC BY-NC) license (https://creativecommons.org/licenses/by-nc/4.0/). See http://ivyspring.com/terms for full terms and conditions. |
spellingShingle | Research Paper Won, Harim I. Schulze, Thomas T. Clement, Emalie J. Watson, Gabrielle F. Watson, Sean M. Warner, Rosalie C. Ramler, Elizabeth A. M. Witte, Elias J. Schoenbeck, Mark A. Rauter, Claudia M. Davis, Paul H. De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title | De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title_full | De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title_fullStr | De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title_full_unstemmed | De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title_short | De novo Assembly of the Burying Beetle Nicrophorus orbicollis (Coleoptera: Silphidae) Transcriptome Across Developmental Stages with Identification of Key Immune Transcripts |
title_sort | de novo assembly of the burying beetle nicrophorus orbicollis (coleoptera: silphidae) transcriptome across developmental stages with identification of key immune transcripts |
topic | Research Paper |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5916875/ https://www.ncbi.nlm.nih.gov/pubmed/29707046 http://dx.doi.org/10.7150/jgen.24228 |
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