Cargando…

SplinectomeR Enables Group Comparisons in Longitudinal Microbiome Studies

Longitudinal, prospective studies often rely on multi-omics approaches, wherein various specimens are analyzed for genomic, metabolomic, and/or transcriptomic profiles. In practice, longitudinal studies in humans and other animals routinely suffer from subject dropout, irregular sampling, and biolog...

Descripción completa

Detalles Bibliográficos
Autores principales:	Shields-Cutler, Robin R., Al-Ghalith, Gabe A., Yassour, Moran, Knights, Dan
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Media S.A. 2018
Materias:	Microbiology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5924793/ https://www.ncbi.nlm.nih.gov/pubmed/29740416 http://dx.doi.org/10.3389/fmicb.2018.00785

Ejemplares similares

SHI7 Is a Self-Learning Pipeline for Multipurpose Short-Read DNA Quality Control
por: Al-Ghalith, Gabriel A., et al.
Publicado: (2018)

Wild primate microbiomes prevent weight gain in germ-free mice
por: Sidiropoulos, Dimitrios N., et al.
Publicado: (2020)

EasyMap - An Interactive Web Tool for Evaluating and Comparing Associations of Clinical Variables and Microbiome Composition
por: Dahan, Ehud, et al.
Publicado: (2022)

Evaluating the Information Content of Shallow Shotgun Metagenomics
por: Hillmann, Benjamin, et al.
Publicado: (2018)

High-Throughput flaA Short Variable Region Sequencing to Assess Campylobacter Diversity in Fecal Samples From Birds
por: Zhang, Qian, et al.
Publicado: (2018)

Characterization of the Oral Microbiome Among Children With Type 1 Diabetes Compared With Healthy Children
por: Moskovitz, Moti, et al.
Publicado: (2021)

Bygiene: The New Paradigm of Bidirectional Hygiene
por: Al-Ghalith, Gabriel A., et al.
Publicado: (2015)

Patterns of seasonality and group membership characterize the gut microbiota in a longitudinal study of wild Verreaux's sifakas (Propithecus verreauxi)
por: Springer, Andrea, et al.
Publicado: (2017)

High-Fat Diet Changes Fungal Microbiomes and Interkingdom Relationships in the Murine Gut
por: Heisel, Timothy, et al.
Publicado: (2017)

CLOUD: a non-parametric detection test for microbiome outliers
por: Montassier, Emmanuel, et al.
Publicado: (2018)

Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
por: Montassier, Emmanuel, et al.
Publicado: (2016)

Erratum to: Pretreatment gut microbiome predicts chemotherapy-related bloodstream infection
por: Montassier, Emmanuel, et al.
Publicado: (2016)

NINJA-OPS: Fast Accurate Marker Gene Alignment Using Concatenated Ribosomes
por: Al-Ghalith, Gabriel A., et al.
Publicado: (2016)

The Infant Gut Commensal Bacteroides dorei Presents a Generalized Transcriptional Response to Various Human Milk Oligosaccharides
por: Kijner, Sivan, et al.
Publicado: (2022)

Editorial: The Human Microbiome and Cancer
por: Moran, Gary P., et al.
Publicado: (2020)

Temporal Alignment of Longitudinal Microbiome Data
por: Armoni, Ran, et al.
Publicado: (2022)

Weight Loss Associated With Time Restricted Eating Is Not Reflected in Changes in the Human Gut Microbiome
por: Bantle, Anne, et al.
Publicado: (2022)

Longitudinal disease-associated gut microbiome differences in infants with food protein-induced allergic proctocolitis
por: Martin, Victoria M., et al.
Publicado: (2022)

A longitudinal study of the diabetic skin and wound microbiome
por: Gardiner, Melissa, et al.
Publicado: (2017)

A Developing Symbiosis: Enabling Cross-Talk Between Ecologists and Microbiome Scientists
por: Tipton, Laura, et al.
Publicado: (2019)

Rigorous Plasma Microbiome Analysis Method Enables Disease Association Discovery in Clinic
por: Luo, Zhenwu, et al.
Publicado: (2021)

Negative Binomial Mixed Models for Analyzing Longitudinal Microbiome Data
por: Zhang, Xinyan, et al.
Publicado: (2018)

Bacterial, fungal, and interkingdom microbiome features of exclusively breastfeeding dyads are associated with infant age, antibiotic exposure, and birth mode
por: Heisel, Timothy, et al.
Publicado: (2022)

GutAlive(®) enables DNA-based microbiome analysis without disrupting the original composition and diversity
por: Montero, Ignacio, et al.
Publicado: (2023)

Lessons learned from the prenatal microbiome controversy
por: Blaser, Martin J., et al.
Publicado: (2021)

Comparison of the Vaginal Microbiomes of Premenopausal and Postmenopausal Women
por: Gliniewicz, Karol, et al.
Publicado: (2019)

Longitudinal analysis of exposure to a low concentration of oxytetracycline on the zebrafish gut microbiome
por: Kayani, Masood ur Rehman, et al.
Publicado: (2022)

Development of the Human Mycobiome over the First Month of Life and across Body Sites
por: Ward, Tonya L., et al.
Publicado: (2018)

Comparison of bacterial culture and 16S rRNA community profiling by clonal analysis and pyrosequencing for the characterization of the dentine caries-associated microbiome
por: Schulze-Schweifing, Kathrin, et al.
Publicado: (2014)

Analysis and Comparison of Gut Microbiome in Young Detection Dogs
por: Li, Zongjie, et al.
Publicado: (2022)

Longitudinal study of the interplay between the skin barrier and facial microbiome over 1 year
por: Seo, Jung Yeon, et al.
Publicado: (2023)

Microbiome Learning Repo (ML Repo): A public repository of microbiome regression and classification tasks
por: Vangay, Pajau, et al.
Publicado: (2019)

‘TIME’: A Web Application for Obtaining Insights into Microbial Ecology Using Longitudinal Microbiome Data
por: Baksi, Krishanu D., et al.
Publicado: (2018)

Assembly Patterns of the Rhizosphere Microbiome Along the Longitudinal Root Axis of Maize (Zea mays L.)
por: Rüger, Lioba, et al.
Publicado: (2021)

Comparison of Meconium DNA Extraction Methods for Use in Microbiome Studies
por: Stinson, Lisa F., et al.
Publicado: (2018)

Corrigendum: ‘TIME’: A Web Application for Obtaining Insights into Microbial Ecology Using Longitudinal Microbiome Data
por: Baksi, Krishanu D., et al.
Publicado: (2020)

Forensic Microbiome Database: A Tool for Forensic Geolocation Meta-Analysis Using Publicly Available 16S rRNA Microbiome Sequencing
por: Singh, Harinder, et al.
Publicado: (2021)

Gut Microbiome Biomarkers and Functional Diversity Within an Amazonian Semi-Nomadic Hunter–Gatherer Group
por: Conteville, Liliane Costa, et al.
Publicado: (2019)

Complex host genetics influence the microbiome in inflammatory bowel disease
por: Knights, Dan, et al.
Publicado: (2014)

The Influence of Proton Pump Inhibitors on the Fecal Microbiome of Infants with Gastroesophageal Reflux—A Prospective Longitudinal Interventional Study
por: Castellani, Christoph, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_b46s19qrof2jnceq77eu2qv7a0