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Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV
Choroidal neovascularization (CNV) is a severe eye disease that leads to blindness, especially in the elderly population. Various endogenous and exogenous regulatory factors promote its pathogenesis. However, the detailed molecular biological mechanisms of CNV have not been fully revealed. In this s...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Hindawi
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925134/ https://www.ncbi.nlm.nih.gov/pubmed/29850576 http://dx.doi.org/10.1155/2018/8406857 |
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author | Luo, YuanYuan Yan, Yan Zhang, Shiqi Li, Zhen |
author_facet | Luo, YuanYuan Yan, Yan Zhang, Shiqi Li, Zhen |
author_sort | Luo, YuanYuan |
collection | PubMed |
description | Choroidal neovascularization (CNV) is a severe eye disease that leads to blindness, especially in the elderly population. Various endogenous and exogenous regulatory factors promote its pathogenesis. However, the detailed molecular biological mechanisms of CNV have not been fully revealed. In this study, by using advanced computational tools, a number of key gene ontology (GO) terms and KEGG pathways were selected for CNV. A total of 29 validated genes associated with CNV and 17,639 nonvalidated genes were encoded based on the features derived from the GO terms and KEGG pathways by using the enrichment theory. The widely accepted feature selection method—maximum relevance and minimum redundancy (mRMR)—was applied to analyze and rank the features. An extensive literature review for the top 45 ranking features was conducted to confirm their close associations with CNV. Identifying the molecular biological mechanisms of CNV as described by the GO terms and KEGG pathways may contribute to improving the understanding of the pathogenesis of CNV. |
format | Online Article Text |
id | pubmed-5925134 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Hindawi |
record_format | MEDLINE/PubMed |
spelling | pubmed-59251342018-05-30 Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV Luo, YuanYuan Yan, Yan Zhang, Shiqi Li, Zhen Biomed Res Int Research Article Choroidal neovascularization (CNV) is a severe eye disease that leads to blindness, especially in the elderly population. Various endogenous and exogenous regulatory factors promote its pathogenesis. However, the detailed molecular biological mechanisms of CNV have not been fully revealed. In this study, by using advanced computational tools, a number of key gene ontology (GO) terms and KEGG pathways were selected for CNV. A total of 29 validated genes associated with CNV and 17,639 nonvalidated genes were encoded based on the features derived from the GO terms and KEGG pathways by using the enrichment theory. The widely accepted feature selection method—maximum relevance and minimum redundancy (mRMR)—was applied to analyze and rank the features. An extensive literature review for the top 45 ranking features was conducted to confirm their close associations with CNV. Identifying the molecular biological mechanisms of CNV as described by the GO terms and KEGG pathways may contribute to improving the understanding of the pathogenesis of CNV. Hindawi 2018-04-11 /pmc/articles/PMC5925134/ /pubmed/29850576 http://dx.doi.org/10.1155/2018/8406857 Text en Copyright © 2018 YuanYuan Luo et al. https://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Luo, YuanYuan Yan, Yan Zhang, Shiqi Li, Zhen Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title | Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title_full | Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title_fullStr | Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title_full_unstemmed | Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title_short | Computational Approach to Investigating Key GO Terms and KEGG Pathways Associated with CNV |
title_sort | computational approach to investigating key go terms and kegg pathways associated with cnv |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925134/ https://www.ncbi.nlm.nih.gov/pubmed/29850576 http://dx.doi.org/10.1155/2018/8406857 |
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