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heatmaply: an R package for creating interactive cluster heatmaps for online publishing
SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data ma...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925766/ https://www.ncbi.nlm.nih.gov/pubmed/29069305 http://dx.doi.org/10.1093/bioinformatics/btx657 |
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author | Galili, Tal O’Callaghan, Alan Sidi, Jonathan Sievert, Carson |
author_facet | Galili, Tal O’Callaghan, Alan Sidi, Jonathan Sievert, Carson |
author_sort | Galili, Tal |
collection | PubMed |
description | SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout. AVAILABILITY AND IMPLEMENTATION: The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. |
format | Online Article Text |
id | pubmed-5925766 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-59257662018-05-04 heatmaply: an R package for creating interactive cluster heatmaps for online publishing Galili, Tal O’Callaghan, Alan Sidi, Jonathan Sievert, Carson Bioinformatics Applications Notes SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout. AVAILABILITY AND IMPLEMENTATION: The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-05-01 2017-10-23 /pmc/articles/PMC5925766/ /pubmed/29069305 http://dx.doi.org/10.1093/bioinformatics/btx657 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Applications Notes Galili, Tal O’Callaghan, Alan Sidi, Jonathan Sievert, Carson heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title | heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title_full | heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title_fullStr | heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title_full_unstemmed | heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title_short | heatmaply: an R package for creating interactive cluster heatmaps for online publishing |
title_sort | heatmaply: an r package for creating interactive cluster heatmaps for online publishing |
topic | Applications Notes |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925766/ https://www.ncbi.nlm.nih.gov/pubmed/29069305 http://dx.doi.org/10.1093/bioinformatics/btx657 |
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