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heatmaply: an R package for creating interactive cluster heatmaps for online publishing

SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data ma...

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Detalles Bibliográficos
Autores principales: Galili, Tal, O’Callaghan, Alan, Sidi, Jonathan, Sievert, Carson
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925766/
https://www.ncbi.nlm.nih.gov/pubmed/29069305
http://dx.doi.org/10.1093/bioinformatics/btx657
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author Galili, Tal
O’Callaghan, Alan
Sidi, Jonathan
Sievert, Carson
author_facet Galili, Tal
O’Callaghan, Alan
Sidi, Jonathan
Sievert, Carson
author_sort Galili, Tal
collection PubMed
description SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout. AVAILABILITY AND IMPLEMENTATION: The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
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spelling pubmed-59257662018-05-04 heatmaply: an R package for creating interactive cluster heatmaps for online publishing Galili, Tal O’Callaghan, Alan Sidi, Jonathan Sievert, Carson Bioinformatics Applications Notes SUMMARY: heatmaply is an R package for easily creating interactive cluster heatmaps that can be shared online as a stand-alone HTML file. Interactivity includes a tooltip display of values when hovering over cells, as well as the ability to zoom in to specific sections of the figure from the data matrix, the side dendrograms, or annotated labels. Thanks to the synergistic relationship between heatmaply and other R packages, the user is empowered by a refined control over the statistical and visual aspects of the heatmap layout. AVAILABILITY AND IMPLEMENTATION: The heatmaply package is available under the GPL-2 Open Source license. It comes with a detailed vignette, and is freely available from: http://cran.r-project.org/package=heatmaply. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Oxford University Press 2018-05-01 2017-10-23 /pmc/articles/PMC5925766/ /pubmed/29069305 http://dx.doi.org/10.1093/bioinformatics/btx657 Text en © The Author 2017. Published by Oxford University Press. http://creativecommons.org/licenses/by/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Applications Notes
Galili, Tal
O’Callaghan, Alan
Sidi, Jonathan
Sievert, Carson
heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title_full heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title_fullStr heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title_full_unstemmed heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title_short heatmaply: an R package for creating interactive cluster heatmaps for online publishing
title_sort heatmaply: an r package for creating interactive cluster heatmaps for online publishing
topic Applications Notes
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5925766/
https://www.ncbi.nlm.nih.gov/pubmed/29069305
http://dx.doi.org/10.1093/bioinformatics/btx657
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