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Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae

Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while...

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Autores principales: Yuan, Jialan, Wang, Zhao, Xing, Junjie, Yang, Qingyong, Chen, Xiao-Lin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5928111/
https://www.ncbi.nlm.nih.gov/pubmed/29713025
http://dx.doi.org/10.1038/s41598-018-25242-w
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author Yuan, Jialan
Wang, Zhao
Xing, Junjie
Yang, Qingyong
Chen, Xiao-Lin
author_facet Yuan, Jialan
Wang, Zhao
Xing, Junjie
Yang, Qingyong
Chen, Xiao-Lin
author_sort Yuan, Jialan
collection PubMed
description Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while only 287 circRNAs from both tissues. This indicated that most of the M. oryzae circRNAs were specifically expressed in mycelium or in conidium. Parental genes of circRNAs in mycelium were enriched in basic metabolisms required for normal growth, while in conidium, they were enriched in biogenesis of storages potentially used for infection. M. oryzae circRNAs could also bind to miRNAs, suggesting they may also function as sponges in fungi. This study suggested M. oryzae circRNAs could play important roles in regulation of growth and development.
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spelling pubmed-59281112018-05-07 Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae Yuan, Jialan Wang, Zhao Xing, Junjie Yang, Qingyong Chen, Xiao-Lin Sci Rep Article Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while only 287 circRNAs from both tissues. This indicated that most of the M. oryzae circRNAs were specifically expressed in mycelium or in conidium. Parental genes of circRNAs in mycelium were enriched in basic metabolisms required for normal growth, while in conidium, they were enriched in biogenesis of storages potentially used for infection. M. oryzae circRNAs could also bind to miRNAs, suggesting they may also function as sponges in fungi. This study suggested M. oryzae circRNAs could play important roles in regulation of growth and development. Nature Publishing Group UK 2018-04-30 /pmc/articles/PMC5928111/ /pubmed/29713025 http://dx.doi.org/10.1038/s41598-018-25242-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Yuan, Jialan
Wang, Zhao
Xing, Junjie
Yang, Qingyong
Chen, Xiao-Lin
Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title_full Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title_fullStr Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title_full_unstemmed Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title_short Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
title_sort genome-wide identification and characterization of circular rnas in the rice blast fungus magnaporthe oryzae
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5928111/
https://www.ncbi.nlm.nih.gov/pubmed/29713025
http://dx.doi.org/10.1038/s41598-018-25242-w
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