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Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae
Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5928111/ https://www.ncbi.nlm.nih.gov/pubmed/29713025 http://dx.doi.org/10.1038/s41598-018-25242-w |
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author | Yuan, Jialan Wang, Zhao Xing, Junjie Yang, Qingyong Chen, Xiao-Lin |
author_facet | Yuan, Jialan Wang, Zhao Xing, Junjie Yang, Qingyong Chen, Xiao-Lin |
author_sort | Yuan, Jialan |
collection | PubMed |
description | Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while only 287 circRNAs from both tissues. This indicated that most of the M. oryzae circRNAs were specifically expressed in mycelium or in conidium. Parental genes of circRNAs in mycelium were enriched in basic metabolisms required for normal growth, while in conidium, they were enriched in biogenesis of storages potentially used for infection. M. oryzae circRNAs could also bind to miRNAs, suggesting they may also function as sponges in fungi. This study suggested M. oryzae circRNAs could play important roles in regulation of growth and development. |
format | Online Article Text |
id | pubmed-5928111 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59281112018-05-07 Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae Yuan, Jialan Wang, Zhao Xing, Junjie Yang, Qingyong Chen, Xiao-Lin Sci Rep Article Numerous circRNAs have been identified in different organisms, but little attention has been addressed on fungal circRNAs. Here, we identified a total of 8,848 circRNAs from the model plant pathogenic fungus M. oryzae. 5,840 circRNAs were identified from mycelium, 2,721 circRNAs from conidium, while only 287 circRNAs from both tissues. This indicated that most of the M. oryzae circRNAs were specifically expressed in mycelium or in conidium. Parental genes of circRNAs in mycelium were enriched in basic metabolisms required for normal growth, while in conidium, they were enriched in biogenesis of storages potentially used for infection. M. oryzae circRNAs could also bind to miRNAs, suggesting they may also function as sponges in fungi. This study suggested M. oryzae circRNAs could play important roles in regulation of growth and development. Nature Publishing Group UK 2018-04-30 /pmc/articles/PMC5928111/ /pubmed/29713025 http://dx.doi.org/10.1038/s41598-018-25242-w Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Yuan, Jialan Wang, Zhao Xing, Junjie Yang, Qingyong Chen, Xiao-Lin Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title | Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title_full | Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title_fullStr | Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title_full_unstemmed | Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title_short | Genome-wide Identification and characterization of circular RNAs in the rice blast fungus Magnaporthe oryzae |
title_sort | genome-wide identification and characterization of circular rnas in the rice blast fungus magnaporthe oryzae |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5928111/ https://www.ncbi.nlm.nih.gov/pubmed/29713025 http://dx.doi.org/10.1038/s41598-018-25242-w |
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