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A convolutional neural network-based screening tool for X-ray serial crystallography

A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image proces...

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Detalles Bibliográficos
Autores principales: Ke, Tsung-Wei, Brewster, Aaron S., Yu, Stella X., Ushizima, Daniela, Yang, Chao, Sauter, Nicholas K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929353/
https://www.ncbi.nlm.nih.gov/pubmed/29714177
http://dx.doi.org/10.1107/S1600577518004873
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author Ke, Tsung-Wei
Brewster, Aaron S.
Yu, Stella X.
Ushizima, Daniela
Yang, Chao
Sauter, Nicholas K.
author_facet Ke, Tsung-Wei
Brewster, Aaron S.
Yu, Stella X.
Ushizima, Daniela
Yang, Chao
Sauter, Nicholas K.
author_sort Ke, Tsung-Wei
collection PubMed
description A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image processing algorithms described can enable the classification of large data sets, acquired under realistic conditions consisting of noisy data with experimental artifacts. Outcomes are compared for different data regimes, including samples from multiple instruments and differing amounts of training data for neural network optimization.
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spelling pubmed-59293532018-05-11 A convolutional neural network-based screening tool for X-ray serial crystallography Ke, Tsung-Wei Brewster, Aaron S. Yu, Stella X. Ushizima, Daniela Yang, Chao Sauter, Nicholas K. J Synchrotron Radiat Research Papers A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image processing algorithms described can enable the classification of large data sets, acquired under realistic conditions consisting of noisy data with experimental artifacts. Outcomes are compared for different data regimes, including samples from multiple instruments and differing amounts of training data for neural network optimization. International Union of Crystallography 2018-04-24 /pmc/articles/PMC5929353/ /pubmed/29714177 http://dx.doi.org/10.1107/S1600577518004873 Text en © Tsung-Wei Ke et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Ke, Tsung-Wei
Brewster, Aaron S.
Yu, Stella X.
Ushizima, Daniela
Yang, Chao
Sauter, Nicholas K.
A convolutional neural network-based screening tool for X-ray serial crystallography
title A convolutional neural network-based screening tool for X-ray serial crystallography
title_full A convolutional neural network-based screening tool for X-ray serial crystallography
title_fullStr A convolutional neural network-based screening tool for X-ray serial crystallography
title_full_unstemmed A convolutional neural network-based screening tool for X-ray serial crystallography
title_short A convolutional neural network-based screening tool for X-ray serial crystallography
title_sort convolutional neural network-based screening tool for x-ray serial crystallography
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929353/
https://www.ncbi.nlm.nih.gov/pubmed/29714177
http://dx.doi.org/10.1107/S1600577518004873
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