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A convolutional neural network-based screening tool for X-ray serial crystallography
A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image proces...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929353/ https://www.ncbi.nlm.nih.gov/pubmed/29714177 http://dx.doi.org/10.1107/S1600577518004873 |
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author | Ke, Tsung-Wei Brewster, Aaron S. Yu, Stella X. Ushizima, Daniela Yang, Chao Sauter, Nicholas K. |
author_facet | Ke, Tsung-Wei Brewster, Aaron S. Yu, Stella X. Ushizima, Daniela Yang, Chao Sauter, Nicholas K. |
author_sort | Ke, Tsung-Wei |
collection | PubMed |
description | A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image processing algorithms described can enable the classification of large data sets, acquired under realistic conditions consisting of noisy data with experimental artifacts. Outcomes are compared for different data regimes, including samples from multiple instruments and differing amounts of training data for neural network optimization. |
format | Online Article Text |
id | pubmed-5929353 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-59293532018-05-11 A convolutional neural network-based screening tool for X-ray serial crystallography Ke, Tsung-Wei Brewster, Aaron S. Yu, Stella X. Ushizima, Daniela Yang, Chao Sauter, Nicholas K. J Synchrotron Radiat Research Papers A new tool is introduced for screening macromolecular X-ray crystallography diffraction images produced at an X-ray free-electron laser light source. Based on a data-driven deep learning approach, the proposed tool executes a convolutional neural network to detect Bragg spots. Automatic image processing algorithms described can enable the classification of large data sets, acquired under realistic conditions consisting of noisy data with experimental artifacts. Outcomes are compared for different data regimes, including samples from multiple instruments and differing amounts of training data for neural network optimization. International Union of Crystallography 2018-04-24 /pmc/articles/PMC5929353/ /pubmed/29714177 http://dx.doi.org/10.1107/S1600577518004873 Text en © Tsung-Wei Ke et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Ke, Tsung-Wei Brewster, Aaron S. Yu, Stella X. Ushizima, Daniela Yang, Chao Sauter, Nicholas K. A convolutional neural network-based screening tool for X-ray serial crystallography |
title | A convolutional neural network-based screening tool for X-ray serial crystallography |
title_full | A convolutional neural network-based screening tool for X-ray serial crystallography |
title_fullStr | A convolutional neural network-based screening tool for X-ray serial crystallography |
title_full_unstemmed | A convolutional neural network-based screening tool for X-ray serial crystallography |
title_short | A convolutional neural network-based screening tool for X-ray serial crystallography |
title_sort | convolutional neural network-based screening tool for x-ray serial crystallography |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929353/ https://www.ncbi.nlm.nih.gov/pubmed/29714177 http://dx.doi.org/10.1107/S1600577518004873 |
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