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Molecular dynamics study of tridymite
Structural changes in tridymite have been investigated by molecular dynamics simulation. Two thermal processes were carried out, one cooling from the high-temperature hexagonal structure of tridymite (HP-tridymite) and the other heating from the low-temperature monoclinic structure of tridymite (MX1...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929378/ https://www.ncbi.nlm.nih.gov/pubmed/29755748 http://dx.doi.org/10.1107/S2052252518004803 |
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author | Takada, Akira Glaser, Kathryn J. Bell, Robert G. Catlow, C. Richard A. |
author_facet | Takada, Akira Glaser, Kathryn J. Bell, Robert G. Catlow, C. Richard A. |
author_sort | Takada, Akira |
collection | PubMed |
description | Structural changes in tridymite have been investigated by molecular dynamics simulation. Two thermal processes were carried out, one cooling from the high-temperature hexagonal structure of tridymite (HP-tridymite) and the other heating from the low-temperature monoclinic structure of tridymite (MX1-tridymite). The former process showed that HP, LHP (low-temperature hexagonal structure), OC (orthorhombic structure with C222(1) symmetry) and OP (orthorhombic structure with P2(1)2(1)2(1) symmetry)-like structures appeared in sequence. In contrast, the latter process showed that MX1, OP, OC, LHP and HP-like structures appeared in sequence. Detailed analysis of the calculated structures showed that the configuration underwent stepwise changes associated with several characteristic modes. First, the structure of HP-tridymite determined from diffraction experiments was identified as a time-averaged structure in a similar manner to β-cristobalite, thus indicating the important role of floppy modes of oxygen atoms at high temperature – one of the common features observed in silica crystals and glass. Secondly, the main structural changes were ascribed to a combination of distortion of the six-membered rings in the layers and misalignment between layers. We suggest that the slowing down of floppy oxygen movement invokes the multistage emergence of structures with lower symmetry on cooling. This study therefore not only reproduces the sequence of the main polymorphic transitions in tridymite, except for the appearance of the monoclinic phase, but also explains the microscopic dynamic structural changes in detail. |
format | Online Article Text |
id | pubmed-5929378 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-59293782018-05-11 Molecular dynamics study of tridymite Takada, Akira Glaser, Kathryn J. Bell, Robert G. Catlow, C. Richard A. IUCrJ Research Papers Structural changes in tridymite have been investigated by molecular dynamics simulation. Two thermal processes were carried out, one cooling from the high-temperature hexagonal structure of tridymite (HP-tridymite) and the other heating from the low-temperature monoclinic structure of tridymite (MX1-tridymite). The former process showed that HP, LHP (low-temperature hexagonal structure), OC (orthorhombic structure with C222(1) symmetry) and OP (orthorhombic structure with P2(1)2(1)2(1) symmetry)-like structures appeared in sequence. In contrast, the latter process showed that MX1, OP, OC, LHP and HP-like structures appeared in sequence. Detailed analysis of the calculated structures showed that the configuration underwent stepwise changes associated with several characteristic modes. First, the structure of HP-tridymite determined from diffraction experiments was identified as a time-averaged structure in a similar manner to β-cristobalite, thus indicating the important role of floppy modes of oxygen atoms at high temperature – one of the common features observed in silica crystals and glass. Secondly, the main structural changes were ascribed to a combination of distortion of the six-membered rings in the layers and misalignment between layers. We suggest that the slowing down of floppy oxygen movement invokes the multistage emergence of structures with lower symmetry on cooling. This study therefore not only reproduces the sequence of the main polymorphic transitions in tridymite, except for the appearance of the monoclinic phase, but also explains the microscopic dynamic structural changes in detail. International Union of Crystallography 2018-04-17 /pmc/articles/PMC5929378/ /pubmed/29755748 http://dx.doi.org/10.1107/S2052252518004803 Text en © Akira Takada et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Takada, Akira Glaser, Kathryn J. Bell, Robert G. Catlow, C. Richard A. Molecular dynamics study of tridymite |
title | Molecular dynamics study of tridymite |
title_full | Molecular dynamics study of tridymite |
title_fullStr | Molecular dynamics study of tridymite |
title_full_unstemmed | Molecular dynamics study of tridymite |
title_short | Molecular dynamics study of tridymite |
title_sort | molecular dynamics study of tridymite |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929378/ https://www.ncbi.nlm.nih.gov/pubmed/29755748 http://dx.doi.org/10.1107/S2052252518004803 |
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