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Ionic scattering factors of atoms that compose biological molecules

Ionic scattering factors of atoms that compose biological molecules have been computed by the multi-configuration Dirac–Fock method. These ions are chemically unstable and their scattering factors had not been reported except for O(−). Yet these factors are required for the estimation of partial cha...

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Autores principales: Yonekura, Koji, Matsuoka, Rei, Yamashita, Yoshiki, Yamane, Tsutomu, Ikeguchi, Mitsunori, Kidera, Akinori, Maki-Yonekura, Saori
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929380/
https://www.ncbi.nlm.nih.gov/pubmed/29755750
http://dx.doi.org/10.1107/S2052252518005237
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author Yonekura, Koji
Matsuoka, Rei
Yamashita, Yoshiki
Yamane, Tsutomu
Ikeguchi, Mitsunori
Kidera, Akinori
Maki-Yonekura, Saori
author_facet Yonekura, Koji
Matsuoka, Rei
Yamashita, Yoshiki
Yamane, Tsutomu
Ikeguchi, Mitsunori
Kidera, Akinori
Maki-Yonekura, Saori
author_sort Yonekura, Koji
collection PubMed
description Ionic scattering factors of atoms that compose biological molecules have been computed by the multi-configuration Dirac–Fock method. These ions are chemically unstable and their scattering factors had not been reported except for O(−). Yet these factors are required for the estimation of partial charges in protein molecules and nucleic acids. The electron scattering factors of these ions are particularly important as the electron scattering curves vary considerably between neutral and charged atoms in the spatial-resolution range explored in structural biology. The calculated X-ray and electron scattering factors have then been parameterized for the major scattering curve models used in X-ray and electron protein crystallography and single-particle cryo-EM. The X-ray and electron scattering factors and the fitting parameters are presented for future reference.
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spelling pubmed-59293802018-05-11 Ionic scattering factors of atoms that compose biological molecules Yonekura, Koji Matsuoka, Rei Yamashita, Yoshiki Yamane, Tsutomu Ikeguchi, Mitsunori Kidera, Akinori Maki-Yonekura, Saori IUCrJ Research Papers Ionic scattering factors of atoms that compose biological molecules have been computed by the multi-configuration Dirac–Fock method. These ions are chemically unstable and their scattering factors had not been reported except for O(−). Yet these factors are required for the estimation of partial charges in protein molecules and nucleic acids. The electron scattering factors of these ions are particularly important as the electron scattering curves vary considerably between neutral and charged atoms in the spatial-resolution range explored in structural biology. The calculated X-ray and electron scattering factors have then been parameterized for the major scattering curve models used in X-ray and electron protein crystallography and single-particle cryo-EM. The X-ray and electron scattering factors and the fitting parameters are presented for future reference. International Union of Crystallography 2018-04-27 /pmc/articles/PMC5929380/ /pubmed/29755750 http://dx.doi.org/10.1107/S2052252518005237 Text en © Koji Yonekura et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Papers
Yonekura, Koji
Matsuoka, Rei
Yamashita, Yoshiki
Yamane, Tsutomu
Ikeguchi, Mitsunori
Kidera, Akinori
Maki-Yonekura, Saori
Ionic scattering factors of atoms that compose biological molecules
title Ionic scattering factors of atoms that compose biological molecules
title_full Ionic scattering factors of atoms that compose biological molecules
title_fullStr Ionic scattering factors of atoms that compose biological molecules
title_full_unstemmed Ionic scattering factors of atoms that compose biological molecules
title_short Ionic scattering factors of atoms that compose biological molecules
title_sort ionic scattering factors of atoms that compose biological molecules
topic Research Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929380/
https://www.ncbi.nlm.nih.gov/pubmed/29755750
http://dx.doi.org/10.1107/S2052252518005237
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