Cargando…

Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish

We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Ch...

Descripción completa

Detalles Bibliográficos
Autores principales: Klangnurak, Wanlada, Fukuyo, Taketo, Rezanujjaman, M. D., Seki, Masahide, Sugano, Sumio, Suzuki, Yutaka, Tokumoto, Toshinobu
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929532/
https://www.ncbi.nlm.nih.gov/pubmed/29715317
http://dx.doi.org/10.1371/journal.pone.0196544
_version_ 1783319423628607488
author Klangnurak, Wanlada
Fukuyo, Taketo
Rezanujjaman, M. D.
Seki, Masahide
Sugano, Sumio
Suzuki, Yutaka
Tokumoto, Toshinobu
author_facet Klangnurak, Wanlada
Fukuyo, Taketo
Rezanujjaman, M. D.
Seki, Masahide
Sugano, Sumio
Suzuki, Yutaka
Tokumoto, Toshinobu
author_sort Klangnurak, Wanlada
collection PubMed
description We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Changes in gene expression were confirmed by qPCR analysis. Furthermore, up-regulation prior to ovulation during natural spawning was verified in samples from natural pairing. Gene knock-out zebrafish strains of one of the candidates, the starmaker gene (stm), were established by CRISPR genome editing techniques. Unexpectedly, homozygous mutants were fertile and could spawn eggs. However, a high percentage of unfertilized eggs and abnormal embryos were produced from these homozygous females. The results suggest that the stm gene is necessary for fertilization. In this study, we selected additional ovulation-inducing candidate genes, and a novel function of the stm gene was investigated.
format Online
Article
Text
id pubmed-5929532
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-59295322018-05-11 Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish Klangnurak, Wanlada Fukuyo, Taketo Rezanujjaman, M. D. Seki, Masahide Sugano, Sumio Suzuki, Yutaka Tokumoto, Toshinobu PLoS One Research Article We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Changes in gene expression were confirmed by qPCR analysis. Furthermore, up-regulation prior to ovulation during natural spawning was verified in samples from natural pairing. Gene knock-out zebrafish strains of one of the candidates, the starmaker gene (stm), were established by CRISPR genome editing techniques. Unexpectedly, homozygous mutants were fertile and could spawn eggs. However, a high percentage of unfertilized eggs and abnormal embryos were produced from these homozygous females. The results suggest that the stm gene is necessary for fertilization. In this study, we selected additional ovulation-inducing candidate genes, and a novel function of the stm gene was investigated. Public Library of Science 2018-05-01 /pmc/articles/PMC5929532/ /pubmed/29715317 http://dx.doi.org/10.1371/journal.pone.0196544 Text en © 2018 Klangnurak et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Klangnurak, Wanlada
Fukuyo, Taketo
Rezanujjaman, M. D.
Seki, Masahide
Sugano, Sumio
Suzuki, Yutaka
Tokumoto, Toshinobu
Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title_full Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title_fullStr Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title_full_unstemmed Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title_short Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
title_sort candidate gene identification of ovulation-inducing genes by rna sequencing with an in vivo assay in zebrafish
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929532/
https://www.ncbi.nlm.nih.gov/pubmed/29715317
http://dx.doi.org/10.1371/journal.pone.0196544
work_keys_str_mv AT klangnurakwanlada candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT fukuyotaketo candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT rezanujjamanmd candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT sekimasahide candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT suganosumio candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT suzukiyutaka candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish
AT tokumototoshinobu candidategeneidentificationofovulationinducinggenesbyrnasequencingwithaninvivoassayinzebrafish