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Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish
We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Ch...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929532/ https://www.ncbi.nlm.nih.gov/pubmed/29715317 http://dx.doi.org/10.1371/journal.pone.0196544 |
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author | Klangnurak, Wanlada Fukuyo, Taketo Rezanujjaman, M. D. Seki, Masahide Sugano, Sumio Suzuki, Yutaka Tokumoto, Toshinobu |
author_facet | Klangnurak, Wanlada Fukuyo, Taketo Rezanujjaman, M. D. Seki, Masahide Sugano, Sumio Suzuki, Yutaka Tokumoto, Toshinobu |
author_sort | Klangnurak, Wanlada |
collection | PubMed |
description | We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Changes in gene expression were confirmed by qPCR analysis. Furthermore, up-regulation prior to ovulation during natural spawning was verified in samples from natural pairing. Gene knock-out zebrafish strains of one of the candidates, the starmaker gene (stm), were established by CRISPR genome editing techniques. Unexpectedly, homozygous mutants were fertile and could spawn eggs. However, a high percentage of unfertilized eggs and abnormal embryos were produced from these homozygous females. The results suggest that the stm gene is necessary for fertilization. In this study, we selected additional ovulation-inducing candidate genes, and a novel function of the stm gene was investigated. |
format | Online Article Text |
id | pubmed-5929532 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59295322018-05-11 Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish Klangnurak, Wanlada Fukuyo, Taketo Rezanujjaman, M. D. Seki, Masahide Sugano, Sumio Suzuki, Yutaka Tokumoto, Toshinobu PLoS One Research Article We previously reported the microarray-based selection of three ovulation-related genes in zebrafish. We used a different selection method in this study, RNA sequencing analysis. An additional eight up-regulated candidates were found as specifically up-regulated genes in ovulation-induced samples. Changes in gene expression were confirmed by qPCR analysis. Furthermore, up-regulation prior to ovulation during natural spawning was verified in samples from natural pairing. Gene knock-out zebrafish strains of one of the candidates, the starmaker gene (stm), were established by CRISPR genome editing techniques. Unexpectedly, homozygous mutants were fertile and could spawn eggs. However, a high percentage of unfertilized eggs and abnormal embryos were produced from these homozygous females. The results suggest that the stm gene is necessary for fertilization. In this study, we selected additional ovulation-inducing candidate genes, and a novel function of the stm gene was investigated. Public Library of Science 2018-05-01 /pmc/articles/PMC5929532/ /pubmed/29715317 http://dx.doi.org/10.1371/journal.pone.0196544 Text en © 2018 Klangnurak et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Klangnurak, Wanlada Fukuyo, Taketo Rezanujjaman, M. D. Seki, Masahide Sugano, Sumio Suzuki, Yutaka Tokumoto, Toshinobu Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title | Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title_full | Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title_fullStr | Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title_full_unstemmed | Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title_short | Candidate gene identification of ovulation-inducing genes by RNA sequencing with an in vivo assay in zebrafish |
title_sort | candidate gene identification of ovulation-inducing genes by rna sequencing with an in vivo assay in zebrafish |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929532/ https://www.ncbi.nlm.nih.gov/pubmed/29715317 http://dx.doi.org/10.1371/journal.pone.0196544 |
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