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FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer
Gene fusion is a chromosomal rearrangement event which plays a significant role in cancer due to the oncogenic potential of the chimeric protein generated through fusions. At present many databases are available in public domain which provides detailed information about known gene fusion events and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929557/ https://www.ncbi.nlm.nih.gov/pubmed/29715310 http://dx.doi.org/10.1371/journal.pone.0196588 |
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author | Panigrahi, Priyabrata Jere, Abhay Anamika, Krishanpal |
author_facet | Panigrahi, Priyabrata Jere, Abhay Anamika, Krishanpal |
author_sort | Panigrahi, Priyabrata |
collection | PubMed |
description | Gene fusion is a chromosomal rearrangement event which plays a significant role in cancer due to the oncogenic potential of the chimeric protein generated through fusions. At present many databases are available in public domain which provides detailed information about known gene fusion events and their functional role. Existing gene fusion detection tools, based on analysis of transcriptomics data usually report a large number of fusion genes as potential candidates, which could be either known or novel or false positives. Manual annotation of these putative genes is indeed time-consuming. We have developed a web platform FusionHub, which acts as integrated search engine interfacing various fusion gene databases and simplifies large scale annotation of fusion genes in a seamless way. In addition, FusionHub provides three ways of visualizing fusion events: circular view, domain architecture view and network view. Design of potential siRNA molecules through ensemble method is another utility integrated in FusionHub that could aid in siRNA-based targeted therapy. FusionHub is freely available at https://fusionhub.persistent.co.in. |
format | Online Article Text |
id | pubmed-5929557 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59295572018-05-11 FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer Panigrahi, Priyabrata Jere, Abhay Anamika, Krishanpal PLoS One Research Article Gene fusion is a chromosomal rearrangement event which plays a significant role in cancer due to the oncogenic potential of the chimeric protein generated through fusions. At present many databases are available in public domain which provides detailed information about known gene fusion events and their functional role. Existing gene fusion detection tools, based on analysis of transcriptomics data usually report a large number of fusion genes as potential candidates, which could be either known or novel or false positives. Manual annotation of these putative genes is indeed time-consuming. We have developed a web platform FusionHub, which acts as integrated search engine interfacing various fusion gene databases and simplifies large scale annotation of fusion genes in a seamless way. In addition, FusionHub provides three ways of visualizing fusion events: circular view, domain architecture view and network view. Design of potential siRNA molecules through ensemble method is another utility integrated in FusionHub that could aid in siRNA-based targeted therapy. FusionHub is freely available at https://fusionhub.persistent.co.in. Public Library of Science 2018-05-01 /pmc/articles/PMC5929557/ /pubmed/29715310 http://dx.doi.org/10.1371/journal.pone.0196588 Text en © 2018 Panigrahi et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Panigrahi, Priyabrata Jere, Abhay Anamika, Krishanpal FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title | FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title_full | FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title_fullStr | FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title_full_unstemmed | FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title_short | FusionHub: A unified web platform for annotation and visualization of gene fusion events in human cancer |
title_sort | fusionhub: a unified web platform for annotation and visualization of gene fusion events in human cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5929557/ https://www.ncbi.nlm.nih.gov/pubmed/29715310 http://dx.doi.org/10.1371/journal.pone.0196588 |
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