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Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Ven...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931646/ https://www.ncbi.nlm.nih.gov/pubmed/29718949 http://dx.doi.org/10.1371/journal.pone.0196466 |
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author | Lv, Changda Li, Qi Kong, Lingfeng |
author_facet | Lv, Changda Li, Qi Kong, Lingfeng |
author_sort | Lv, Changda |
collection | PubMed |
description | Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Veneridae), compared them with that of Dosinia japonica and established a phylogenetic tree for Veneridae. The mitogenomes of D. altior (17,536 bp) and D. troscheli (17,229 bp) are the two smallest in Veneridae, which include 13 protein-coding genes, 2 ribosomal RNA genes, 22 tRNA genes, and non-coding regions. The mitogenomes of the Dosinia species are similar in size, gene content, AT content, AT- and GC- skews, and gene arrangement. The phylogenetic relationships of family Veneridae were established based on 12 concatenated protein-coding genes using maximum likelihood and Bayesian analyses, which supported that Dosininae and Meretricinae have a closer relationship, with Tapetinae being the sister taxon. The information obtained in this study will contribute to further understanding of the molecular features of bivalve mitogenomes and the evolutionary history of the genus Dosinia. |
format | Online Article Text |
id | pubmed-5931646 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59316462018-05-11 Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae Lv, Changda Li, Qi Kong, Lingfeng PLoS One Research Article Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Veneridae), compared them with that of Dosinia japonica and established a phylogenetic tree for Veneridae. The mitogenomes of D. altior (17,536 bp) and D. troscheli (17,229 bp) are the two smallest in Veneridae, which include 13 protein-coding genes, 2 ribosomal RNA genes, 22 tRNA genes, and non-coding regions. The mitogenomes of the Dosinia species are similar in size, gene content, AT content, AT- and GC- skews, and gene arrangement. The phylogenetic relationships of family Veneridae were established based on 12 concatenated protein-coding genes using maximum likelihood and Bayesian analyses, which supported that Dosininae and Meretricinae have a closer relationship, with Tapetinae being the sister taxon. The information obtained in this study will contribute to further understanding of the molecular features of bivalve mitogenomes and the evolutionary history of the genus Dosinia. Public Library of Science 2018-05-02 /pmc/articles/PMC5931646/ /pubmed/29718949 http://dx.doi.org/10.1371/journal.pone.0196466 Text en © 2018 Lv et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Lv, Changda Li, Qi Kong, Lingfeng Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title | Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title_full | Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title_fullStr | Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title_full_unstemmed | Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title_short | Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae |
title_sort | comparative analyses of the complete mitochondrial genomes of dosinia clams and their phylogenetic position within veneridae |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931646/ https://www.ncbi.nlm.nih.gov/pubmed/29718949 http://dx.doi.org/10.1371/journal.pone.0196466 |
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