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Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae

Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Ven...

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Autores principales: Lv, Changda, Li, Qi, Kong, Lingfeng
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931646/
https://www.ncbi.nlm.nih.gov/pubmed/29718949
http://dx.doi.org/10.1371/journal.pone.0196466
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author Lv, Changda
Li, Qi
Kong, Lingfeng
author_facet Lv, Changda
Li, Qi
Kong, Lingfeng
author_sort Lv, Changda
collection PubMed
description Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Veneridae), compared them with that of Dosinia japonica and established a phylogenetic tree for Veneridae. The mitogenomes of D. altior (17,536 bp) and D. troscheli (17,229 bp) are the two smallest in Veneridae, which include 13 protein-coding genes, 2 ribosomal RNA genes, 22 tRNA genes, and non-coding regions. The mitogenomes of the Dosinia species are similar in size, gene content, AT content, AT- and GC- skews, and gene arrangement. The phylogenetic relationships of family Veneridae were established based on 12 concatenated protein-coding genes using maximum likelihood and Bayesian analyses, which supported that Dosininae and Meretricinae have a closer relationship, with Tapetinae being the sister taxon. The information obtained in this study will contribute to further understanding of the molecular features of bivalve mitogenomes and the evolutionary history of the genus Dosinia.
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spelling pubmed-59316462018-05-11 Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae Lv, Changda Li, Qi Kong, Lingfeng PLoS One Research Article Mitochondrial genomes have proved to be a powerful tool in resolving phylogenetic relationship. In order to understand the mitogenome characteristics and phylogenetic position of the genus Dosinia, we sequenced the complete mitochondrial genomes of Dosinia altior and Dosinia troscheli (Bivalvia: Veneridae), compared them with that of Dosinia japonica and established a phylogenetic tree for Veneridae. The mitogenomes of D. altior (17,536 bp) and D. troscheli (17,229 bp) are the two smallest in Veneridae, which include 13 protein-coding genes, 2 ribosomal RNA genes, 22 tRNA genes, and non-coding regions. The mitogenomes of the Dosinia species are similar in size, gene content, AT content, AT- and GC- skews, and gene arrangement. The phylogenetic relationships of family Veneridae were established based on 12 concatenated protein-coding genes using maximum likelihood and Bayesian analyses, which supported that Dosininae and Meretricinae have a closer relationship, with Tapetinae being the sister taxon. The information obtained in this study will contribute to further understanding of the molecular features of bivalve mitogenomes and the evolutionary history of the genus Dosinia. Public Library of Science 2018-05-02 /pmc/articles/PMC5931646/ /pubmed/29718949 http://dx.doi.org/10.1371/journal.pone.0196466 Text en © 2018 Lv et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Lv, Changda
Li, Qi
Kong, Lingfeng
Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title_full Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title_fullStr Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title_full_unstemmed Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title_short Comparative analyses of the complete mitochondrial genomes of Dosinia clams and their phylogenetic position within Veneridae
title_sort comparative analyses of the complete mitochondrial genomes of dosinia clams and their phylogenetic position within veneridae
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5931646/
https://www.ncbi.nlm.nih.gov/pubmed/29718949
http://dx.doi.org/10.1371/journal.pone.0196466
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