Cargando…

Hackathons as a means of accelerating scientific discoveries and knowledge transfer

Scientific research plays a key role in the advancement of human knowledge and pursuit of solutions to important societal challenges. Typically, research occurs within specific institutions where data are generated and subsequently analyzed. Although collaborative science bringing together multiple...

Descripción completa

Detalles Bibliográficos
Autores principales: Ghouila, Amel, Siwo, Geoffrey Henry, Entfellner, Jean-Baka Domelevo, Panji, Sumir, Button-Simons, Katrina A., Davis, Sage Zenon, Fadlelmola, Faisal M., Ferdig, Michael T., Mulder, Nicola
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Cold Spring Harbor Laboratory Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932615/
https://www.ncbi.nlm.nih.gov/pubmed/29650552
http://dx.doi.org/10.1101/gr.228460.117
_version_ 1783319849527672832
author Ghouila, Amel
Siwo, Geoffrey Henry
Entfellner, Jean-Baka Domelevo
Panji, Sumir
Button-Simons, Katrina A.
Davis, Sage Zenon
Fadlelmola, Faisal M.
Ferdig, Michael T.
Mulder, Nicola
author_facet Ghouila, Amel
Siwo, Geoffrey Henry
Entfellner, Jean-Baka Domelevo
Panji, Sumir
Button-Simons, Katrina A.
Davis, Sage Zenon
Fadlelmola, Faisal M.
Ferdig, Michael T.
Mulder, Nicola
author_sort Ghouila, Amel
collection PubMed
description Scientific research plays a key role in the advancement of human knowledge and pursuit of solutions to important societal challenges. Typically, research occurs within specific institutions where data are generated and subsequently analyzed. Although collaborative science bringing together multiple institutions is now common, in such collaborations the analytical processing of the data is often performed by individual researchers within the team, with only limited internal oversight and critical analysis of the workflow prior to publication. Here, we show how hackathons can be a means of enhancing collaborative science by enabling peer review before results of analyses are published by cross-validating the design of studies or underlying data sets and by driving reproducibility of scientific analyses. Traditionally, in data analysis processes, data generators and bioinformaticians are divided and do not collaborate on analyzing the data. Hackathons are a good strategy to build bridges over the traditional divide and are potentially a great agile extension to the more structured collaborations between multiple investigators and institutions.
format Online
Article
Text
id pubmed-5932615
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Cold Spring Harbor Laboratory Press
record_format MEDLINE/PubMed
spelling pubmed-59326152018-05-31 Hackathons as a means of accelerating scientific discoveries and knowledge transfer Ghouila, Amel Siwo, Geoffrey Henry Entfellner, Jean-Baka Domelevo Panji, Sumir Button-Simons, Katrina A. Davis, Sage Zenon Fadlelmola, Faisal M. Ferdig, Michael T. Mulder, Nicola Genome Res Resource Scientific research plays a key role in the advancement of human knowledge and pursuit of solutions to important societal challenges. Typically, research occurs within specific institutions where data are generated and subsequently analyzed. Although collaborative science bringing together multiple institutions is now common, in such collaborations the analytical processing of the data is often performed by individual researchers within the team, with only limited internal oversight and critical analysis of the workflow prior to publication. Here, we show how hackathons can be a means of enhancing collaborative science by enabling peer review before results of analyses are published by cross-validating the design of studies or underlying data sets and by driving reproducibility of scientific analyses. Traditionally, in data analysis processes, data generators and bioinformaticians are divided and do not collaborate on analyzing the data. Hackathons are a good strategy to build bridges over the traditional divide and are potentially a great agile extension to the more structured collaborations between multiple investigators and institutions. Cold Spring Harbor Laboratory Press 2018-05 /pmc/articles/PMC5932615/ /pubmed/29650552 http://dx.doi.org/10.1101/gr.228460.117 Text en © 2018 Ghouila et al.; Published by Cold Spring Harbor Laboratory Press http://creativecommons.org/licenses/by/4.0/ This article, published in Genome Research, is available under a Creative Commons License (Attribution 4.0 International), as described at http://creativecommons.org/licenses/by/4.0/.
spellingShingle Resource
Ghouila, Amel
Siwo, Geoffrey Henry
Entfellner, Jean-Baka Domelevo
Panji, Sumir
Button-Simons, Katrina A.
Davis, Sage Zenon
Fadlelmola, Faisal M.
Ferdig, Michael T.
Mulder, Nicola
Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title_full Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title_fullStr Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title_full_unstemmed Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title_short Hackathons as a means of accelerating scientific discoveries and knowledge transfer
title_sort hackathons as a means of accelerating scientific discoveries and knowledge transfer
topic Resource
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5932615/
https://www.ncbi.nlm.nih.gov/pubmed/29650552
http://dx.doi.org/10.1101/gr.228460.117
work_keys_str_mv AT ghouilaamel hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT siwogeoffreyhenry hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT entfellnerjeanbakadomelevo hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT panjisumir hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT buttonsimonskatrinaa hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT davissagezenon hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT fadlelmolafaisalm hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT ferdigmichaelt hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer
AT muldernicola hackathonsasameansofacceleratingscientificdiscoveriesandknowledgetransfer