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A method to estimate statistical errors of properties derived from charge-density modelling
Estimating uncertainties of property values derived from a charge-density model is not straightforward. A methodology, based on calculation of sample standard deviations (SSD) of properties using randomly deviating charge-density models, is proposed with the MoPro software. The parameter shifts appl...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933404/ https://www.ncbi.nlm.nih.gov/pubmed/29724964 http://dx.doi.org/10.1107/S2053273318004308 |
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author | Fournier, Bertrand Guillot, Benoît Lecomte, Claude Escudero-Adán, Eduardo C. Jelsch, Christian |
author_facet | Fournier, Bertrand Guillot, Benoît Lecomte, Claude Escudero-Adán, Eduardo C. Jelsch, Christian |
author_sort | Fournier, Bertrand |
collection | PubMed |
description | Estimating uncertainties of property values derived from a charge-density model is not straightforward. A methodology, based on calculation of sample standard deviations (SSD) of properties using randomly deviating charge-density models, is proposed with the MoPro software. The parameter shifts applied in the deviating models are generated in order to respect the variance–covariance matrix issued from the least-squares refinement. This ‘SSD methodology’ procedure can be applied to estimate uncertainties of any property related to a charge-density model obtained by least-squares fitting. This includes topological properties such as critical point coordinates, electron density, Laplacian and ellipticity at critical points and charges integrated over atomic basins. Errors on electrostatic potentials and interaction energies are also available now through this procedure. The method is exemplified with the charge density of compound (E)-5-phenylpent-1-enylboronic acid, refined at 0.45 Å resolution. The procedure is implemented in the freely available MoPro program dedicated to charge-density refinement and modelling. |
format | Online Article Text |
id | pubmed-5933404 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-59334042018-05-11 A method to estimate statistical errors of properties derived from charge-density modelling Fournier, Bertrand Guillot, Benoît Lecomte, Claude Escudero-Adán, Eduardo C. Jelsch, Christian Acta Crystallogr A Found Adv Research Papers Estimating uncertainties of property values derived from a charge-density model is not straightforward. A methodology, based on calculation of sample standard deviations (SSD) of properties using randomly deviating charge-density models, is proposed with the MoPro software. The parameter shifts applied in the deviating models are generated in order to respect the variance–covariance matrix issued from the least-squares refinement. This ‘SSD methodology’ procedure can be applied to estimate uncertainties of any property related to a charge-density model obtained by least-squares fitting. This includes topological properties such as critical point coordinates, electron density, Laplacian and ellipticity at critical points and charges integrated over atomic basins. Errors on electrostatic potentials and interaction energies are also available now through this procedure. The method is exemplified with the charge density of compound (E)-5-phenylpent-1-enylboronic acid, refined at 0.45 Å resolution. The procedure is implemented in the freely available MoPro program dedicated to charge-density refinement and modelling. International Union of Crystallography 2018-05-03 /pmc/articles/PMC5933404/ /pubmed/29724964 http://dx.doi.org/10.1107/S2053273318004308 Text en © Bertrand Fournier et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Papers Fournier, Bertrand Guillot, Benoît Lecomte, Claude Escudero-Adán, Eduardo C. Jelsch, Christian A method to estimate statistical errors of properties derived from charge-density modelling |
title | A method to estimate statistical errors of properties derived from charge-density modelling |
title_full | A method to estimate statistical errors of properties derived from charge-density modelling |
title_fullStr | A method to estimate statistical errors of properties derived from charge-density modelling |
title_full_unstemmed | A method to estimate statistical errors of properties derived from charge-density modelling |
title_short | A method to estimate statistical errors of properties derived from charge-density modelling |
title_sort | method to estimate statistical errors of properties derived from charge-density modelling |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933404/ https://www.ncbi.nlm.nih.gov/pubmed/29724964 http://dx.doi.org/10.1107/S2053273318004308 |
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