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An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices

A new R software package, RAC, is presented. RAC allows to simulate the rearing cycle of 4 species, finfish and shellfish, highly important in terms of production in the Mediterranean Sea. The package works both at the scale of the individual and of the farmed population. Mathematical models include...

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Autores principales: Baldan, Damiano, Porporato, Erika Maria Diletta, Pastres, Roberto, Brigolin, Daniele
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933756/
https://www.ncbi.nlm.nih.gov/pubmed/29723208
http://dx.doi.org/10.1371/journal.pone.0195732
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author Baldan, Damiano
Porporato, Erika Maria Diletta
Pastres, Roberto
Brigolin, Daniele
author_facet Baldan, Damiano
Porporato, Erika Maria Diletta
Pastres, Roberto
Brigolin, Daniele
author_sort Baldan, Damiano
collection PubMed
description A new R software package, RAC, is presented. RAC allows to simulate the rearing cycle of 4 species, finfish and shellfish, highly important in terms of production in the Mediterranean Sea. The package works both at the scale of the individual and of the farmed population. Mathematical models included in RAC were all validated in previous works, and account for growth and metabolism, based on input data characterizing the forcing functions—water temperature, and food quality/quantity. The package provides a demo dataset of forcings for each species, as well as a typical set of husbandry parameters for Mediterranean conditions. The present work illustrates RAC main features, and its current capabilities/limitations. Three test cases are presented as a proof of concept of RAC applicability, and to demonstrate its potential for integrating different open products nowadays provided by remote sensing and operational oceanography.
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spelling pubmed-59337562018-05-18 An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices Baldan, Damiano Porporato, Erika Maria Diletta Pastres, Roberto Brigolin, Daniele PLoS One Research Article A new R software package, RAC, is presented. RAC allows to simulate the rearing cycle of 4 species, finfish and shellfish, highly important in terms of production in the Mediterranean Sea. The package works both at the scale of the individual and of the farmed population. Mathematical models included in RAC were all validated in previous works, and account for growth and metabolism, based on input data characterizing the forcing functions—water temperature, and food quality/quantity. The package provides a demo dataset of forcings for each species, as well as a typical set of husbandry parameters for Mediterranean conditions. The present work illustrates RAC main features, and its current capabilities/limitations. Three test cases are presented as a proof of concept of RAC applicability, and to demonstrate its potential for integrating different open products nowadays provided by remote sensing and operational oceanography. Public Library of Science 2018-05-03 /pmc/articles/PMC5933756/ /pubmed/29723208 http://dx.doi.org/10.1371/journal.pone.0195732 Text en © 2018 Baldan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Baldan, Damiano
Porporato, Erika Maria Diletta
Pastres, Roberto
Brigolin, Daniele
An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title_full An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title_fullStr An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title_full_unstemmed An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title_short An R package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
title_sort r package for simulating growth and organic wastage in aquaculture farms in response to environmental conditions and husbandry practices
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933756/
https://www.ncbi.nlm.nih.gov/pubmed/29723208
http://dx.doi.org/10.1371/journal.pone.0195732
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