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Identifying robust hysteresis in networks

We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they...

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Detalles Bibliográficos
Autores principales: Gedeon, Tomáš, Cummins, Bree, Harker, Shaun, Mischaikow, Konstantin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933818/
https://www.ncbi.nlm.nih.gov/pubmed/29684007
http://dx.doi.org/10.1371/journal.pcbi.1006121
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author Gedeon, Tomáš
Cummins, Bree
Harker, Shaun
Mischaikow, Konstantin
author_facet Gedeon, Tomáš
Cummins, Bree
Harker, Shaun
Mischaikow, Konstantin
author_sort Gedeon, Tomáš
collection PubMed
description We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they are supported. We illustrate our approach on several networks underlying the restriction point of the cell cycle in humans and yeast. We rank networks by how robustly they support hysteresis, which is the observed phenotype. We find that the best 6-node human network and the yeast network share similar topology and robustness of hysteresis, in spite of having no homology between the corresponding nodes of the network. Our approach provides a new tool linking network structure and dynamics.
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spelling pubmed-59338182018-05-18 Identifying robust hysteresis in networks Gedeon, Tomáš Cummins, Bree Harker, Shaun Mischaikow, Konstantin PLoS Comput Biol Research Article We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they are supported. We illustrate our approach on several networks underlying the restriction point of the cell cycle in humans and yeast. We rank networks by how robustly they support hysteresis, which is the observed phenotype. We find that the best 6-node human network and the yeast network share similar topology and robustness of hysteresis, in spite of having no homology between the corresponding nodes of the network. Our approach provides a new tool linking network structure and dynamics. Public Library of Science 2018-04-23 /pmc/articles/PMC5933818/ /pubmed/29684007 http://dx.doi.org/10.1371/journal.pcbi.1006121 Text en © 2018 Gedeon et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Gedeon, Tomáš
Cummins, Bree
Harker, Shaun
Mischaikow, Konstantin
Identifying robust hysteresis in networks
title Identifying robust hysteresis in networks
title_full Identifying robust hysteresis in networks
title_fullStr Identifying robust hysteresis in networks
title_full_unstemmed Identifying robust hysteresis in networks
title_short Identifying robust hysteresis in networks
title_sort identifying robust hysteresis in networks
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933818/
https://www.ncbi.nlm.nih.gov/pubmed/29684007
http://dx.doi.org/10.1371/journal.pcbi.1006121
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