Cargando…
Identifying robust hysteresis in networks
We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they...
Autores principales: | , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933818/ https://www.ncbi.nlm.nih.gov/pubmed/29684007 http://dx.doi.org/10.1371/journal.pcbi.1006121 |
_version_ | 1783320018266619904 |
---|---|
author | Gedeon, Tomáš Cummins, Bree Harker, Shaun Mischaikow, Konstantin |
author_facet | Gedeon, Tomáš Cummins, Bree Harker, Shaun Mischaikow, Konstantin |
author_sort | Gedeon, Tomáš |
collection | PubMed |
description | We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they are supported. We illustrate our approach on several networks underlying the restriction point of the cell cycle in humans and yeast. We rank networks by how robustly they support hysteresis, which is the observed phenotype. We find that the best 6-node human network and the yeast network share similar topology and robustness of hysteresis, in spite of having no homology between the corresponding nodes of the network. Our approach provides a new tool linking network structure and dynamics. |
format | Online Article Text |
id | pubmed-5933818 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59338182018-05-18 Identifying robust hysteresis in networks Gedeon, Tomáš Cummins, Bree Harker, Shaun Mischaikow, Konstantin PLoS Comput Biol Research Article We present a new modeling and computational tool that computes rigorous summaries of network dynamics over large sets of parameter values. These summaries, organized in a database, can be searched for observed dynamics, e.g., bistability and hysteresis, to discover parameter regimes over which they are supported. We illustrate our approach on several networks underlying the restriction point of the cell cycle in humans and yeast. We rank networks by how robustly they support hysteresis, which is the observed phenotype. We find that the best 6-node human network and the yeast network share similar topology and robustness of hysteresis, in spite of having no homology between the corresponding nodes of the network. Our approach provides a new tool linking network structure and dynamics. Public Library of Science 2018-04-23 /pmc/articles/PMC5933818/ /pubmed/29684007 http://dx.doi.org/10.1371/journal.pcbi.1006121 Text en © 2018 Gedeon et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Gedeon, Tomáš Cummins, Bree Harker, Shaun Mischaikow, Konstantin Identifying robust hysteresis in networks |
title | Identifying robust hysteresis in networks |
title_full | Identifying robust hysteresis in networks |
title_fullStr | Identifying robust hysteresis in networks |
title_full_unstemmed | Identifying robust hysteresis in networks |
title_short | Identifying robust hysteresis in networks |
title_sort | identifying robust hysteresis in networks |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5933818/ https://www.ncbi.nlm.nih.gov/pubmed/29684007 http://dx.doi.org/10.1371/journal.pcbi.1006121 |
work_keys_str_mv | AT gedeontomas identifyingrobusthysteresisinnetworks AT cumminsbree identifyingrobusthysteresisinnetworks AT harkershaun identifyingrobusthysteresisinnetworks AT mischaikowkonstantin identifyingrobusthysteresisinnetworks |