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Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure

The rare biosphere is predicted to aid in maintaining functional redundancy as well as contributing to community turnover across many environments. Recent developments have partially confirmed these hypotheses, while also giving new insights into dormancy and activity among rare communities. However...

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Detalles Bibliográficos
Autores principales: Kaminsky, Rachel, Morales, Sergio E.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Media S.A. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5934496/
https://www.ncbi.nlm.nih.gov/pubmed/29755437
http://dx.doi.org/10.3389/fmicb.2018.00809
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author Kaminsky, Rachel
Morales, Sergio E.
author_facet Kaminsky, Rachel
Morales, Sergio E.
author_sort Kaminsky, Rachel
collection PubMed
description The rare biosphere is predicted to aid in maintaining functional redundancy as well as contributing to community turnover across many environments. Recent developments have partially confirmed these hypotheses, while also giving new insights into dormancy and activity among rare communities. However, less attention has been paid to the rare biosphere in soils. This study provides insight into the rare biosphere’s contribution to soil microbial diversity through the study of 781 soil samples representing 24 edaphically diverse sites. Results show that Bray–Curtis dissimilarity for time-sensitive conditionally rare taxa (CRT) does not correlate with whole community dissimilarity, while dissimilarity for space-sensitive CRT only weakly correlate with whole community dissimilarity. This adds to current understanding of spatiotemporal filtering of rare taxa, showing that CRT do not account for community variance across tested soils, but are under the same selective pressure as the whole community.
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spelling pubmed-59344962018-05-11 Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure Kaminsky, Rachel Morales, Sergio E. Front Microbiol Microbiology The rare biosphere is predicted to aid in maintaining functional redundancy as well as contributing to community turnover across many environments. Recent developments have partially confirmed these hypotheses, while also giving new insights into dormancy and activity among rare communities. However, less attention has been paid to the rare biosphere in soils. This study provides insight into the rare biosphere’s contribution to soil microbial diversity through the study of 781 soil samples representing 24 edaphically diverse sites. Results show that Bray–Curtis dissimilarity for time-sensitive conditionally rare taxa (CRT) does not correlate with whole community dissimilarity, while dissimilarity for space-sensitive CRT only weakly correlate with whole community dissimilarity. This adds to current understanding of spatiotemporal filtering of rare taxa, showing that CRT do not account for community variance across tested soils, but are under the same selective pressure as the whole community. Frontiers Media S.A. 2018-04-27 /pmc/articles/PMC5934496/ /pubmed/29755437 http://dx.doi.org/10.3389/fmicb.2018.00809 Text en Copyright © 2018 Kaminsky and Morales. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.
spellingShingle Microbiology
Kaminsky, Rachel
Morales, Sergio E.
Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title_full Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title_fullStr Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title_full_unstemmed Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title_short Conditionally Rare Taxa Contribute but Do Not Account for Changes in Soil Prokaryotic Community Structure
title_sort conditionally rare taxa contribute but do not account for changes in soil prokaryotic community structure
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5934496/
https://www.ncbi.nlm.nih.gov/pubmed/29755437
http://dx.doi.org/10.3389/fmicb.2018.00809
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