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A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were est...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
The Royal Society Publishing
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936932/ https://www.ncbi.nlm.nih.gov/pubmed/29765667 http://dx.doi.org/10.1098/rsos.172140 |
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author | Yang, Huan Yu, Pingtian Lu, Yi Jiao, Zhaoqun Chen, Liqun Zhou, Ying Shen, Yuping Jia, Xiaobin |
author_facet | Yang, Huan Yu, Pingtian Lu, Yi Jiao, Zhaoqun Chen, Liqun Zhou, Ying Shen, Yuping Jia, Xiaobin |
author_sort | Yang, Huan |
collection | PubMed |
description | A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were established to target species for reliable identification of their commercial products. They were confirmed to have a high level of inter-species-specificity and good intra-species stability. The limit of detection was estimated to be 1 ng of genomes for all of five assays. Also, the validation results demonstrated that the raw materials and processed products in addition to some of the highly processed products can be conveniently authenticated with good sensitivity and precision by this newly proposed approach. Especially, when reference sample mixtures were assayed, these primer sets have still performed well but not the prevailing COI barcoding technology. These could assist in the discrimination and identification of other animal-derived medicines for their form of raw material, the pulverized and the complex. |
format | Online Article Text |
id | pubmed-5936932 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | The Royal Society Publishing |
record_format | MEDLINE/PubMed |
spelling | pubmed-59369322018-05-15 A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers Yang, Huan Yu, Pingtian Lu, Yi Jiao, Zhaoqun Chen, Liqun Zhou, Ying Shen, Yuping Jia, Xiaobin R Soc Open Sci Chemistry A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were established to target species for reliable identification of their commercial products. They were confirmed to have a high level of inter-species-specificity and good intra-species stability. The limit of detection was estimated to be 1 ng of genomes for all of five assays. Also, the validation results demonstrated that the raw materials and processed products in addition to some of the highly processed products can be conveniently authenticated with good sensitivity and precision by this newly proposed approach. Especially, when reference sample mixtures were assayed, these primer sets have still performed well but not the prevailing COI barcoding technology. These could assist in the discrimination and identification of other animal-derived medicines for their form of raw material, the pulverized and the complex. The Royal Society Publishing 2018-04-18 /pmc/articles/PMC5936932/ /pubmed/29765667 http://dx.doi.org/10.1098/rsos.172140 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited. |
spellingShingle | Chemistry Yang, Huan Yu, Pingtian Lu, Yi Jiao, Zhaoqun Chen, Liqun Zhou, Ying Shen, Yuping Jia, Xiaobin A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title | A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title_full | A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title_fullStr | A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title_full_unstemmed | A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title_short | A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers |
title_sort | novel non-sequencing approach for rapid authentication of testudinis carapax et plastrum and trionycis carapax by species-specific primers |
topic | Chemistry |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936932/ https://www.ncbi.nlm.nih.gov/pubmed/29765667 http://dx.doi.org/10.1098/rsos.172140 |
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