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A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers

A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were est...

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Detalles Bibliográficos
Autores principales: Yang, Huan, Yu, Pingtian, Lu, Yi, Jiao, Zhaoqun, Chen, Liqun, Zhou, Ying, Shen, Yuping, Jia, Xiaobin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: The Royal Society Publishing 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936932/
https://www.ncbi.nlm.nih.gov/pubmed/29765667
http://dx.doi.org/10.1098/rsos.172140
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author Yang, Huan
Yu, Pingtian
Lu, Yi
Jiao, Zhaoqun
Chen, Liqun
Zhou, Ying
Shen, Yuping
Jia, Xiaobin
author_facet Yang, Huan
Yu, Pingtian
Lu, Yi
Jiao, Zhaoqun
Chen, Liqun
Zhou, Ying
Shen, Yuping
Jia, Xiaobin
author_sort Yang, Huan
collection PubMed
description A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were established to target species for reliable identification of their commercial products. They were confirmed to have a high level of inter-species-specificity and good intra-species stability. The limit of detection was estimated to be 1 ng of genomes for all of five assays. Also, the validation results demonstrated that the raw materials and processed products in addition to some of the highly processed products can be conveniently authenticated with good sensitivity and precision by this newly proposed approach. Especially, when reference sample mixtures were assayed, these primer sets have still performed well but not the prevailing COI barcoding technology. These could assist in the discrimination and identification of other animal-derived medicines for their form of raw material, the pulverized and the complex.
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spelling pubmed-59369322018-05-15 A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers Yang, Huan Yu, Pingtian Lu, Yi Jiao, Zhaoqun Chen, Liqun Zhou, Ying Shen, Yuping Jia, Xiaobin R Soc Open Sci Chemistry A novel non-sequencing approach was developed to detect short DNA fragments (ca 100 bp) for rapid authentication of two natural products, namely Testudinis Carapax et Plastrum and Trionycis Carapax, based on the difference in mitochondrial genome. Five specifically designed primer reactions were established to target species for reliable identification of their commercial products. They were confirmed to have a high level of inter-species-specificity and good intra-species stability. The limit of detection was estimated to be 1 ng of genomes for all of five assays. Also, the validation results demonstrated that the raw materials and processed products in addition to some of the highly processed products can be conveniently authenticated with good sensitivity and precision by this newly proposed approach. Especially, when reference sample mixtures were assayed, these primer sets have still performed well but not the prevailing COI barcoding technology. These could assist in the discrimination and identification of other animal-derived medicines for their form of raw material, the pulverized and the complex. The Royal Society Publishing 2018-04-18 /pmc/articles/PMC5936932/ /pubmed/29765667 http://dx.doi.org/10.1098/rsos.172140 Text en © 2018 The Authors. http://creativecommons.org/licenses/by/4.0/ Published by the Royal Society under the terms of the Creative Commons Attribution License http://creativecommons.org/licenses/by/4.0/, which permits unrestricted use, provided the original author and source are credited.
spellingShingle Chemistry
Yang, Huan
Yu, Pingtian
Lu, Yi
Jiao, Zhaoqun
Chen, Liqun
Zhou, Ying
Shen, Yuping
Jia, Xiaobin
A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title_full A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title_fullStr A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title_full_unstemmed A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title_short A novel non-sequencing approach for rapid authentication of Testudinis Carapax et Plastrum and Trionycis Carapax by species-specific primers
title_sort novel non-sequencing approach for rapid authentication of testudinis carapax et plastrum and trionycis carapax by species-specific primers
topic Chemistry
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5936932/
https://www.ncbi.nlm.nih.gov/pubmed/29765667
http://dx.doi.org/10.1098/rsos.172140
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