Cargando…

JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison

Summary: JSpecies Web Server (JSpeciesWS) is a user-friendly online service for in silico calculating the extent of identity between two genomes, a parameter routinely used in the process of polyphasic microbial species circumscription. The service measures the average nucleotide identity (ANI) base...

Descripción completa

Detalles Bibliográficos
Autores principales:	Richter, Michael, Rosselló-Móra, Ramon, Oliver Glöckner, Frank, Peplies, Jörg
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2016
Materias:	Applications Notes
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5939971/ https://www.ncbi.nlm.nih.gov/pubmed/26576653 http://dx.doi.org/10.1093/bioinformatics/btv681

Ejemplares similares

CVTree3 Web Server for Whole-genome-based and Alignment-free Prokaryotic Phylogeny and Taxonomy
por: Zuo, Guanghong, et al.
Publicado: (2015)

MISA-web: a web server for microsatellite prediction
por: Beier, Sebastian, et al.
Publicado: (2017)

LigDig: a web server for querying ligand–protein interactions
por: Fuller, Jonathan C., et al.
Publicado: (2015)

DAVID-WS: a stateful web service to facilitate gene/protein list analysis
por: Jiao, Xiaoli, et al.
Publicado: (2012)

The COMER web server for protein analysis by homology
por: Dapkūnas, Justas, et al.
Publicado: (2022)

TMFoldWeb: a web server for predicting transmembrane protein fold class
por: Kozma, Dániel, et al.
Publicado: (2015)

WASPS: web-assisted symbolic plasmid synteny server
por: Badel, Catherine, et al.
Publicado: (2020)

The DOMINO web-server for active module identification analysis
por: Levi, Hagai, et al.
Publicado: (2022)

DupliPHY-Web: a web server for DupliPHY and DupliPHY-ML
por: Ames, Ryan M., et al.
Publicado: (2015)

G4Hunter web application: a web server for G-quadruplex prediction
por: Brázda, Václav, et al.
Publicado: (2019)

Rankprop: a web server for protein remote homology detection
por: Melvin, Iain, et al.
Publicado: (2009)

COGNAT: a web server for comparative analysis of genomic neighborhoods
por: Klimchuk, Olesya I., et al.
Publicado: (2017)

The ACPYPE web server for small-molecule MD topology generation
por: Kagami, Luciano, et al.
Publicado: (2023)

IsoAnalytics: a single-cell proteomics web server
por: Palmer, Suzette N, et al.
Publicado: (2023)

ANCHOR: web server for predicting protein binding regions in disordered proteins
por: Dosztányi, Zsuzsanna, et al.
Publicado: (2009)

iDBPs: a web server for the identification of DNA binding proteins
por: Nimrod, Guy, et al.
Publicado: (2010)

The anisotropic network model web server at 2015 (ANM 2.0)
por: Eyal, Eran, et al.
Publicado: (2015)

BEAM web server: a tool for structural RNA motif discovery
por: Pietrosanto, Marco, et al.
Publicado: (2018)

dAPE: a web server to detect homorepeats and follow their evolution
por: Mier, Pablo, et al.
Publicado: (2017)

alona: a web server for single-cell RNA-seq analysis
por: Franzén, Oscar, et al.
Publicado: (2020)

CROSSalive: a web server for predicting the in vivo structure of RNA molecules
por: Ponti, Riccardo Delli, et al.
Publicado: (2019)

BAGET 2.0: an updated web tool for the effortless retrieval of prokaryotic gene context and sequence
por: Hepp, Benjamin, et al.
Publicado: (2021)

CPSP-web-tools: a server for 3D lattice protein studies
por: Mann, Martin, et al.
Publicado: (2009)

CD-HIT Suite: a web server for clustering and comparing biological sequences
por: Huang, Ying, et al.
Publicado: (2010)

CHOYCE: a web server for constrained homology modelling with cryoEM maps
por: Rawi, Reda, et al.
Publicado: (2010)

PBOND: Web Server for the Prediction of Proline and Non-Proline cis/trans Isomerization
por: Exarchos, Konstantinos P., et al.
Publicado: (2009)

omiXcore: a web server for prediction of protein interactions with large RNA
por: Armaos, Alexandros, et al.
Publicado: (2017)

PhaGAA: an integrated web server platform for phage genome annotation and analysis
por: Wu, Jiawei, et al.
Publicado: (2023)

wTAM: a web server for annotation of weighted human microRNAs
por: Cui, Chunmei, et al.
Publicado: (2021)

VAPEX: an interactive web server for the deep exploration of natural virus and phage genomes
por: Hepp, Benjamin, et al.
Publicado: (2023)

ChemBioServer 2.0: an advanced web server for filtering, clustering and networking of chemical compounds facilitating both drug discovery and repurposing
por: Karatzas, Evangelos, et al.
Publicado: (2020)

MoDPepInt: an interactive web server for prediction of modular domain–peptide interactions
por: Kundu, Kousik, et al.
Publicado: (2014)

COGcollator: a web server for analysis of distant relationships between homologous protein families
por: Dibrova, Daria V., et al.
Publicado: (2017)

MMseqs2 desktop and local web server app for fast, interactive sequence searches
por: Mirdita, Milot, et al.
Publicado: (2019)

Operon-mapper: a web server for precise operon identification in bacterial and archaeal genomes
por: Taboada, Blanca, et al.
Publicado: (2018)

Calypso: a user-friendly web-server for mining and visualizing microbiome–environment interactions
por: Zakrzewski, Martha, et al.
Publicado: (2017)

GENIUS: web server to predict local gene networks and key genes for biological functions
por: Puelma, Tomas, et al.
Publicado: (2017)

EpiDISH web server: Epigenetic Dissection of Intra-Sample-Heterogeneity with online GUI
por: Zheng, Shijie C, et al.
Publicado: (2020)

PhaBOX: a web server for identifying and characterizing phage contigs in metagenomic data
por: Shang, Jiayu, et al.
Publicado: (2023)

Protein Backbone Torsion Angle-Based Structure Comparison and Secondary Structure Database Web Server
por: Jung, Sunghoon, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_fhpc8g5j1js2t6gv2bs18vbb1s