Cargando…

ClueNet: Clustering a temporal network based on topological similarity rather than denseness

Network clustering is a very popular topic in the network science field. Its goal is to divide (partition) the network into groups (clusters or communities) of “topologically related” nodes, where the resulting topology-based clusters are expected to “correlate” well with node label information, i.e...

Descripción completa

Detalles Bibliográficos
Autores principales: Crawford, Joseph, Milenković, Tijana
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940177/
https://www.ncbi.nlm.nih.gov/pubmed/29738568
http://dx.doi.org/10.1371/journal.pone.0195993
_version_ 1783321063639220224
author Crawford, Joseph
Milenković, Tijana
author_facet Crawford, Joseph
Milenković, Tijana
author_sort Crawford, Joseph
collection PubMed
description Network clustering is a very popular topic in the network science field. Its goal is to divide (partition) the network into groups (clusters or communities) of “topologically related” nodes, where the resulting topology-based clusters are expected to “correlate” well with node label information, i.e., metadata, such as cellular functions of genes/proteins in biological networks, or age or gender of people in social networks. Even for static data, the problem of network clustering is complex. For dynamic data, the problem is even more complex, due to an additional dimension of the data—their temporal (evolving) nature. Since the problem is computationally intractable, heuristic approaches need to be sought. Existing approaches for dynamic network clustering (DNC) have drawbacks. First, they assume that nodes should be in the same cluster if they are densely interconnected within the network. We hypothesize that in some applications, it might be of interest to cluster nodes that are topologically similar to each other instead of or in addition to requiring the nodes to be densely interconnected. Second, they ignore temporal information in their early steps, and when they do consider this information later on, they do so implicitly. We hypothesize that capturing temporal information earlier in the clustering process and doing so explicitly will improve results. We test these two hypotheses via our new approach called ClueNet. We evaluate ClueNet against six existing DNC methods on both social networks capturing evolving interactions between individuals (such as interactions between students in a high school) and biological networks capturing interactions between biomolecules in the cell at different ages. We find that ClueNet is superior in over 83% of all evaluation tests. As more real-world dynamic data are becoming available, DNC and thus ClueNet will only continue to gain importance.
format Online
Article
Text
id pubmed-5940177
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-59401772018-05-18 ClueNet: Clustering a temporal network based on topological similarity rather than denseness Crawford, Joseph Milenković, Tijana PLoS One Research Article Network clustering is a very popular topic in the network science field. Its goal is to divide (partition) the network into groups (clusters or communities) of “topologically related” nodes, where the resulting topology-based clusters are expected to “correlate” well with node label information, i.e., metadata, such as cellular functions of genes/proteins in biological networks, or age or gender of people in social networks. Even for static data, the problem of network clustering is complex. For dynamic data, the problem is even more complex, due to an additional dimension of the data—their temporal (evolving) nature. Since the problem is computationally intractable, heuristic approaches need to be sought. Existing approaches for dynamic network clustering (DNC) have drawbacks. First, they assume that nodes should be in the same cluster if they are densely interconnected within the network. We hypothesize that in some applications, it might be of interest to cluster nodes that are topologically similar to each other instead of or in addition to requiring the nodes to be densely interconnected. Second, they ignore temporal information in their early steps, and when they do consider this information later on, they do so implicitly. We hypothesize that capturing temporal information earlier in the clustering process and doing so explicitly will improve results. We test these two hypotheses via our new approach called ClueNet. We evaluate ClueNet against six existing DNC methods on both social networks capturing evolving interactions between individuals (such as interactions between students in a high school) and biological networks capturing interactions between biomolecules in the cell at different ages. We find that ClueNet is superior in over 83% of all evaluation tests. As more real-world dynamic data are becoming available, DNC and thus ClueNet will only continue to gain importance. Public Library of Science 2018-05-08 /pmc/articles/PMC5940177/ /pubmed/29738568 http://dx.doi.org/10.1371/journal.pone.0195993 Text en © 2018 Crawford, Milenković http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Crawford, Joseph
Milenković, Tijana
ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title_full ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title_fullStr ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title_full_unstemmed ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title_short ClueNet: Clustering a temporal network based on topological similarity rather than denseness
title_sort cluenet: clustering a temporal network based on topological similarity rather than denseness
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5940177/
https://www.ncbi.nlm.nih.gov/pubmed/29738568
http://dx.doi.org/10.1371/journal.pone.0195993
work_keys_str_mv AT crawfordjoseph cluenetclusteringatemporalnetworkbasedontopologicalsimilarityratherthandenseness
AT milenkovictijana cluenetclusteringatemporalnetworkbasedontopologicalsimilarityratherthandenseness