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Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942823/ https://www.ncbi.nlm.nih.gov/pubmed/29742125 http://dx.doi.org/10.1371/journal.pone.0196846 |
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author | Senaras, Caglar Niazi, Muhammad Khalid Khan Sahiner, Berkman Pennell, Michael P. Tozbikian, Gary Lozanski, Gerard Gurcan, Metin N. |
author_facet | Senaras, Caglar Niazi, Muhammad Khalid Khan Sahiner, Berkman Pennell, Michael P. Tozbikian, Gary Lozanski, Gerard Gurcan, Metin N. |
author_sort | Senaras, Caglar |
collection | PubMed |
description | In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under a microscope. The manual enumeration suffers from poor reproducibility even in the hands of expert pathologists. To facilitate this process, we propose a novel method to create artificial datasets with the known ground truth which allows us to analyze the recall, precision, accuracy, and intra- and inter-observer variability in a systematic manner, enabling us to compare different computer analysis approaches. Our method employs a conditional Generative Adversarial Network that uses a database of Ki67 stained tissues of breast cancer patients to generate synthetic digital slides. Our experiments show that synthetic images are indistinguishable from real images. Six readers (three pathologists and three image analysts) tried to differentiate 15 real from 15 synthetic images and the probability that the average reader would be able to correctly classify an image as synthetic or real more than 50% of the time was only 44.7%. |
format | Online Article Text |
id | pubmed-5942823 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-59428232018-05-18 Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images Senaras, Caglar Niazi, Muhammad Khalid Khan Sahiner, Berkman Pennell, Michael P. Tozbikian, Gary Lozanski, Gerard Gurcan, Metin N. PLoS One Research Article In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under a microscope. The manual enumeration suffers from poor reproducibility even in the hands of expert pathologists. To facilitate this process, we propose a novel method to create artificial datasets with the known ground truth which allows us to analyze the recall, precision, accuracy, and intra- and inter-observer variability in a systematic manner, enabling us to compare different computer analysis approaches. Our method employs a conditional Generative Adversarial Network that uses a database of Ki67 stained tissues of breast cancer patients to generate synthetic digital slides. Our experiments show that synthetic images are indistinguishable from real images. Six readers (three pathologists and three image analysts) tried to differentiate 15 real from 15 synthetic images and the probability that the average reader would be able to correctly classify an image as synthetic or real more than 50% of the time was only 44.7%. Public Library of Science 2018-05-09 /pmc/articles/PMC5942823/ /pubmed/29742125 http://dx.doi.org/10.1371/journal.pone.0196846 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication. |
spellingShingle | Research Article Senaras, Caglar Niazi, Muhammad Khalid Khan Sahiner, Berkman Pennell, Michael P. Tozbikian, Gary Lozanski, Gerard Gurcan, Metin N. Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title | Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title_full | Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title_fullStr | Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title_full_unstemmed | Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title_short | Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images |
title_sort | optimized generation of high-resolution phantom images using cgan: application to quantification of ki67 breast cancer images |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942823/ https://www.ncbi.nlm.nih.gov/pubmed/29742125 http://dx.doi.org/10.1371/journal.pone.0196846 |
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