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Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images

In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under...

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Autores principales: Senaras, Caglar, Niazi, Muhammad Khalid Khan, Sahiner, Berkman, Pennell, Michael P., Tozbikian, Gary, Lozanski, Gerard, Gurcan, Metin N.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942823/
https://www.ncbi.nlm.nih.gov/pubmed/29742125
http://dx.doi.org/10.1371/journal.pone.0196846
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author Senaras, Caglar
Niazi, Muhammad Khalid Khan
Sahiner, Berkman
Pennell, Michael P.
Tozbikian, Gary
Lozanski, Gerard
Gurcan, Metin N.
author_facet Senaras, Caglar
Niazi, Muhammad Khalid Khan
Sahiner, Berkman
Pennell, Michael P.
Tozbikian, Gary
Lozanski, Gerard
Gurcan, Metin N.
author_sort Senaras, Caglar
collection PubMed
description In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under a microscope. The manual enumeration suffers from poor reproducibility even in the hands of expert pathologists. To facilitate this process, we propose a novel method to create artificial datasets with the known ground truth which allows us to analyze the recall, precision, accuracy, and intra- and inter-observer variability in a systematic manner, enabling us to compare different computer analysis approaches. Our method employs a conditional Generative Adversarial Network that uses a database of Ki67 stained tissues of breast cancer patients to generate synthetic digital slides. Our experiments show that synthetic images are indistinguishable from real images. Six readers (three pathologists and three image analysts) tried to differentiate 15 real from 15 synthetic images and the probability that the average reader would be able to correctly classify an image as synthetic or real more than 50% of the time was only 44.7%.
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spelling pubmed-59428232018-05-18 Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images Senaras, Caglar Niazi, Muhammad Khalid Khan Sahiner, Berkman Pennell, Michael P. Tozbikian, Gary Lozanski, Gerard Gurcan, Metin N. PLoS One Research Article In pathology, Immunohistochemical staining (IHC) of tissue sections is regularly used to diagnose and grade malignant tumors. Typically, IHC stain interpretation is rendered by a trained pathologist using a manual method, which consists of counting each positively- and negatively-stained cell under a microscope. The manual enumeration suffers from poor reproducibility even in the hands of expert pathologists. To facilitate this process, we propose a novel method to create artificial datasets with the known ground truth which allows us to analyze the recall, precision, accuracy, and intra- and inter-observer variability in a systematic manner, enabling us to compare different computer analysis approaches. Our method employs a conditional Generative Adversarial Network that uses a database of Ki67 stained tissues of breast cancer patients to generate synthetic digital slides. Our experiments show that synthetic images are indistinguishable from real images. Six readers (three pathologists and three image analysts) tried to differentiate 15 real from 15 synthetic images and the probability that the average reader would be able to correctly classify an image as synthetic or real more than 50% of the time was only 44.7%. Public Library of Science 2018-05-09 /pmc/articles/PMC5942823/ /pubmed/29742125 http://dx.doi.org/10.1371/journal.pone.0196846 Text en https://creativecommons.org/publicdomain/zero/1.0/ This is an open access article, free of all copyright, and may be freely reproduced, distributed, transmitted, modified, built upon, or otherwise used by anyone for any lawful purpose. The work is made available under the Creative Commons CC0 (https://creativecommons.org/publicdomain/zero/1.0/) public domain dedication.
spellingShingle Research Article
Senaras, Caglar
Niazi, Muhammad Khalid Khan
Sahiner, Berkman
Pennell, Michael P.
Tozbikian, Gary
Lozanski, Gerard
Gurcan, Metin N.
Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title_full Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title_fullStr Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title_full_unstemmed Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title_short Optimized generation of high-resolution phantom images using cGAN: Application to quantification of Ki67 breast cancer images
title_sort optimized generation of high-resolution phantom images using cgan: application to quantification of ki67 breast cancer images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5942823/
https://www.ncbi.nlm.nih.gov/pubmed/29742125
http://dx.doi.org/10.1371/journal.pone.0196846
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