Cargando…

Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing

Research into suicide prevention has been hampered by methodological limitations such as low sample size and recall bias. Recently, Natural Language Processing (NLP) strategies have been used with Electronic Health Records to increase information extraction from free text notes as well as structured...

Descripción completa

Detalles Bibliográficos
Autores principales: Fernandes, Andrea C., Dutta, Rina, Velupillai, Sumithra, Sanyal, Jyoti, Stewart, Robert, Chandran, David
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943451/
https://www.ncbi.nlm.nih.gov/pubmed/29743531
http://dx.doi.org/10.1038/s41598-018-25773-2
_version_ 1783321629163520000
author Fernandes, Andrea C.
Dutta, Rina
Velupillai, Sumithra
Sanyal, Jyoti
Stewart, Robert
Chandran, David
author_facet Fernandes, Andrea C.
Dutta, Rina
Velupillai, Sumithra
Sanyal, Jyoti
Stewart, Robert
Chandran, David
author_sort Fernandes, Andrea C.
collection PubMed
description Research into suicide prevention has been hampered by methodological limitations such as low sample size and recall bias. Recently, Natural Language Processing (NLP) strategies have been used with Electronic Health Records to increase information extraction from free text notes as well as structured fields concerning suicidality and this allows access to much larger cohorts than previously possible. This paper presents two novel NLP approaches – a rule-based approach to classify the presence of suicide ideation and a hybrid machine learning and rule-based approach to identify suicide attempts in a psychiatric clinical database. Good performance of the two classifiers in the evaluation study suggest they can be used to accurately detect mentions of suicide ideation and attempt within free-text documents in this psychiatric database. The novelty of the two approaches lies in the malleability of each classifier if a need to refine performance, or meet alternate classification requirements arises. The algorithms can also be adapted to fit infrastructures of other clinical datasets given sufficient clinical recording practice knowledge, without dependency on medical codes or additional data extraction of known risk factors to predict suicidal behaviour.
format Online
Article
Text
id pubmed-5943451
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-59434512018-05-14 Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing Fernandes, Andrea C. Dutta, Rina Velupillai, Sumithra Sanyal, Jyoti Stewart, Robert Chandran, David Sci Rep Article Research into suicide prevention has been hampered by methodological limitations such as low sample size and recall bias. Recently, Natural Language Processing (NLP) strategies have been used with Electronic Health Records to increase information extraction from free text notes as well as structured fields concerning suicidality and this allows access to much larger cohorts than previously possible. This paper presents two novel NLP approaches – a rule-based approach to classify the presence of suicide ideation and a hybrid machine learning and rule-based approach to identify suicide attempts in a psychiatric clinical database. Good performance of the two classifiers in the evaluation study suggest they can be used to accurately detect mentions of suicide ideation and attempt within free-text documents in this psychiatric database. The novelty of the two approaches lies in the malleability of each classifier if a need to refine performance, or meet alternate classification requirements arises. The algorithms can also be adapted to fit infrastructures of other clinical datasets given sufficient clinical recording practice knowledge, without dependency on medical codes or additional data extraction of known risk factors to predict suicidal behaviour. Nature Publishing Group UK 2018-05-09 /pmc/articles/PMC5943451/ /pubmed/29743531 http://dx.doi.org/10.1038/s41598-018-25773-2 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Fernandes, Andrea C.
Dutta, Rina
Velupillai, Sumithra
Sanyal, Jyoti
Stewart, Robert
Chandran, David
Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title_full Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title_fullStr Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title_full_unstemmed Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title_short Identifying Suicide Ideation and Suicidal Attempts in a Psychiatric Clinical Research Database using Natural Language Processing
title_sort identifying suicide ideation and suicidal attempts in a psychiatric clinical research database using natural language processing
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943451/
https://www.ncbi.nlm.nih.gov/pubmed/29743531
http://dx.doi.org/10.1038/s41598-018-25773-2
work_keys_str_mv AT fernandesandreac identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing
AT duttarina identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing
AT velupillaisumithra identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing
AT sanyaljyoti identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing
AT stewartrobert identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing
AT chandrandavid identifyingsuicideideationandsuicidalattemptsinapsychiatricclinicalresearchdatabaseusingnaturallanguageprocessing