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A generalised significance test for individual communities in networks

Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such...

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Detalles Bibliográficos
Autores principales: Kojaku, Sadamori, Masuda, Naoki
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943579/
https://www.ncbi.nlm.nih.gov/pubmed/29743534
http://dx.doi.org/10.1038/s41598-018-25560-z
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author Kojaku, Sadamori
Masuda, Naoki
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Masuda, Naoki
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description Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such as the size, density of edges, connectivity to other communities and significance. In the present study, we propose a method to statistically test the significance of individual communities in a given network. Compared to the previous methods, the present algorithm is unique in that it accepts different community-detection algorithms and the corresponding quality function for single communities. The present method requires that a quality of each community can be quantified and that community detection is performed as optimisation of such a quality function summed over the communities. Various community detection algorithms including modularity maximisation and graph partitioning meet this criterion. Our method estimates a distribution of the quality function for randomised networks to calculate a likelihood of each community in the given network. We illustrate our algorithm by synthetic and empirical networks.
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spelling pubmed-59435792018-05-14 A generalised significance test for individual communities in networks Kojaku, Sadamori Masuda, Naoki Sci Rep Article Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such as the size, density of edges, connectivity to other communities and significance. In the present study, we propose a method to statistically test the significance of individual communities in a given network. Compared to the previous methods, the present algorithm is unique in that it accepts different community-detection algorithms and the corresponding quality function for single communities. The present method requires that a quality of each community can be quantified and that community detection is performed as optimisation of such a quality function summed over the communities. Various community detection algorithms including modularity maximisation and graph partitioning meet this criterion. Our method estimates a distribution of the quality function for randomised networks to calculate a likelihood of each community in the given network. We illustrate our algorithm by synthetic and empirical networks. Nature Publishing Group UK 2018-05-09 /pmc/articles/PMC5943579/ /pubmed/29743534 http://dx.doi.org/10.1038/s41598-018-25560-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Kojaku, Sadamori
Masuda, Naoki
A generalised significance test for individual communities in networks
title A generalised significance test for individual communities in networks
title_full A generalised significance test for individual communities in networks
title_fullStr A generalised significance test for individual communities in networks
title_full_unstemmed A generalised significance test for individual communities in networks
title_short A generalised significance test for individual communities in networks
title_sort generalised significance test for individual communities in networks
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943579/
https://www.ncbi.nlm.nih.gov/pubmed/29743534
http://dx.doi.org/10.1038/s41598-018-25560-z
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