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A generalised significance test for individual communities in networks
Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943579/ https://www.ncbi.nlm.nih.gov/pubmed/29743534 http://dx.doi.org/10.1038/s41598-018-25560-z |
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author | Kojaku, Sadamori Masuda, Naoki |
author_facet | Kojaku, Sadamori Masuda, Naoki |
author_sort | Kojaku, Sadamori |
collection | PubMed |
description | Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such as the size, density of edges, connectivity to other communities and significance. In the present study, we propose a method to statistically test the significance of individual communities in a given network. Compared to the previous methods, the present algorithm is unique in that it accepts different community-detection algorithms and the corresponding quality function for single communities. The present method requires that a quality of each community can be quantified and that community detection is performed as optimisation of such a quality function summed over the communities. Various community detection algorithms including modularity maximisation and graph partitioning meet this criterion. Our method estimates a distribution of the quality function for randomised networks to calculate a likelihood of each community in the given network. We illustrate our algorithm by synthetic and empirical networks. |
format | Online Article Text |
id | pubmed-5943579 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-59435792018-05-14 A generalised significance test for individual communities in networks Kojaku, Sadamori Masuda, Naoki Sci Rep Article Many empirical networks have community structure, in which nodes are densely interconnected within each community (i.e., a group of nodes) and sparsely across different communities. Like other local and meso-scale structure of networks, communities are generally heterogeneous in various aspects such as the size, density of edges, connectivity to other communities and significance. In the present study, we propose a method to statistically test the significance of individual communities in a given network. Compared to the previous methods, the present algorithm is unique in that it accepts different community-detection algorithms and the corresponding quality function for single communities. The present method requires that a quality of each community can be quantified and that community detection is performed as optimisation of such a quality function summed over the communities. Various community detection algorithms including modularity maximisation and graph partitioning meet this criterion. Our method estimates a distribution of the quality function for randomised networks to calculate a likelihood of each community in the given network. We illustrate our algorithm by synthetic and empirical networks. Nature Publishing Group UK 2018-05-09 /pmc/articles/PMC5943579/ /pubmed/29743534 http://dx.doi.org/10.1038/s41598-018-25560-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Kojaku, Sadamori Masuda, Naoki A generalised significance test for individual communities in networks |
title | A generalised significance test for individual communities in networks |
title_full | A generalised significance test for individual communities in networks |
title_fullStr | A generalised significance test for individual communities in networks |
title_full_unstemmed | A generalised significance test for individual communities in networks |
title_short | A generalised significance test for individual communities in networks |
title_sort | generalised significance test for individual communities in networks |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5943579/ https://www.ncbi.nlm.nih.gov/pubmed/29743534 http://dx.doi.org/10.1038/s41598-018-25560-z |
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