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Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action

INTRODUCTION: Computer assisted technologies based on algorithmic software segmentation are an increasing topic of interest in complex surgical cases. However—due to functional instability, time consuming software processes, personnel resources or licensed-based financial costs many segmentation pro...

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Autores principales: Wallner, Jürgen, Hochegger, Kerstin, Chen, Xiaojun, Mischak, Irene, Reinbacher, Knut, Pau, Mauro, Zrnc, Tomislav, Schwenzer-Zimmerer, Katja, Zemann, Wolfgang, Schmalstieg, Dieter, Egger, Jan
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944980/
https://www.ncbi.nlm.nih.gov/pubmed/29746490
http://dx.doi.org/10.1371/journal.pone.0196378
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author Wallner, Jürgen
Hochegger, Kerstin
Chen, Xiaojun
Mischak, Irene
Reinbacher, Knut
Pau, Mauro
Zrnc, Tomislav
Schwenzer-Zimmerer, Katja
Zemann, Wolfgang
Schmalstieg, Dieter
Egger, Jan
author_facet Wallner, Jürgen
Hochegger, Kerstin
Chen, Xiaojun
Mischak, Irene
Reinbacher, Knut
Pau, Mauro
Zrnc, Tomislav
Schwenzer-Zimmerer, Katja
Zemann, Wolfgang
Schmalstieg, Dieter
Egger, Jan
author_sort Wallner, Jürgen
collection PubMed
description INTRODUCTION: Computer assisted technologies based on algorithmic software segmentation are an increasing topic of interest in complex surgical cases. However—due to functional instability, time consuming software processes, personnel resources or licensed-based financial costs many segmentation processes are often outsourced from clinical centers to third parties and the industry. Therefore, the aim of this trial was to assess the practical feasibility of an easy available, functional stable and licensed-free segmentation approach to be used in the clinical practice. MATERIAL AND METHODS: In this retrospective, randomized, controlled trail the accuracy and accordance of the open-source based segmentation algorithm GrowCut was assessed through the comparison to the manually generated ground truth of the same anatomy using 10 CT lower jaw data-sets from the clinical routine. Assessment parameters were the segmentation time, the volume, the voxel number, the Dice Score and the Hausdorff distance. RESULTS: Overall semi-automatic GrowCut segmentation times were about one minute. Mean Dice Score values of over 85% and Hausdorff Distances below 33.5 voxel could be achieved between the algorithmic GrowCut-based segmentations and the manual generated ground truth schemes. Statistical differences between the assessment parameters were not significant (p<0.05) and correlation coefficients were close to the value one (r > 0.94) for any of the comparison made between the two groups. DISCUSSION: Complete functional stable and time saving segmentations with high accuracy and high positive correlation could be performed by the presented interactive open-source based approach. In the cranio-maxillofacial complex the used method could represent an algorithmic alternative for image-based segmentation in the clinical practice for e.g. surgical treatment planning or visualization of postoperative results and offers several advantages. Due to an open-source basis the used method could be further developed by other groups or specialists. Systematic comparisons to other segmentation approaches or with a greater data amount are areas of future works.
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spelling pubmed-59449802018-05-25 Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action Wallner, Jürgen Hochegger, Kerstin Chen, Xiaojun Mischak, Irene Reinbacher, Knut Pau, Mauro Zrnc, Tomislav Schwenzer-Zimmerer, Katja Zemann, Wolfgang Schmalstieg, Dieter Egger, Jan PLoS One Research Article INTRODUCTION: Computer assisted technologies based on algorithmic software segmentation are an increasing topic of interest in complex surgical cases. However—due to functional instability, time consuming software processes, personnel resources or licensed-based financial costs many segmentation processes are often outsourced from clinical centers to third parties and the industry. Therefore, the aim of this trial was to assess the practical feasibility of an easy available, functional stable and licensed-free segmentation approach to be used in the clinical practice. MATERIAL AND METHODS: In this retrospective, randomized, controlled trail the accuracy and accordance of the open-source based segmentation algorithm GrowCut was assessed through the comparison to the manually generated ground truth of the same anatomy using 10 CT lower jaw data-sets from the clinical routine. Assessment parameters were the segmentation time, the volume, the voxel number, the Dice Score and the Hausdorff distance. RESULTS: Overall semi-automatic GrowCut segmentation times were about one minute. Mean Dice Score values of over 85% and Hausdorff Distances below 33.5 voxel could be achieved between the algorithmic GrowCut-based segmentations and the manual generated ground truth schemes. Statistical differences between the assessment parameters were not significant (p<0.05) and correlation coefficients were close to the value one (r > 0.94) for any of the comparison made between the two groups. DISCUSSION: Complete functional stable and time saving segmentations with high accuracy and high positive correlation could be performed by the presented interactive open-source based approach. In the cranio-maxillofacial complex the used method could represent an algorithmic alternative for image-based segmentation in the clinical practice for e.g. surgical treatment planning or visualization of postoperative results and offers several advantages. Due to an open-source basis the used method could be further developed by other groups or specialists. Systematic comparisons to other segmentation approaches or with a greater data amount are areas of future works. Public Library of Science 2018-05-10 /pmc/articles/PMC5944980/ /pubmed/29746490 http://dx.doi.org/10.1371/journal.pone.0196378 Text en © 2018 Wallner et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Wallner, Jürgen
Hochegger, Kerstin
Chen, Xiaojun
Mischak, Irene
Reinbacher, Knut
Pau, Mauro
Zrnc, Tomislav
Schwenzer-Zimmerer, Katja
Zemann, Wolfgang
Schmalstieg, Dieter
Egger, Jan
Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title_full Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title_fullStr Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title_full_unstemmed Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title_short Clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: Practical feasibility and assessment of a new course of action
title_sort clinical evaluation of semi-automatic open-source algorithmic software segmentation of the mandibular bone: practical feasibility and assessment of a new course of action
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5944980/
https://www.ncbi.nlm.nih.gov/pubmed/29746490
http://dx.doi.org/10.1371/journal.pone.0196378
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