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Using pseudoalignment and base quality to accurately quantify microbial community composition

Pooled DNA from multiple unknown organisms arises in a variety of contexts, for example microbial samples from ecological or human health research. Determining the composition of pooled samples can be difficult, especially at the scale of modern sequencing data and reference databases. Here we propo...

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Detalles Bibliográficos
Autores principales: Reppell, Mark, Novembre, John
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945057/
https://www.ncbi.nlm.nih.gov/pubmed/29659582
http://dx.doi.org/10.1371/journal.pcbi.1006096