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Characterization of the complete mitochondrial DNA of Theretra japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae)
Abstract. In the present study, the complete mitogenome of Theretra japonica was sequenced and compared with other sequenced mitogenomes of Sphingidae species. The mitogenome of T. japonica, containing 37 genes (13 protein-coding genes, 22 tRNA genes, and two rRNA genes) and a region rich in adenine...
Autores principales: | , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pensoft Publishers
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945705/ https://www.ncbi.nlm.nih.gov/pubmed/29755260 http://dx.doi.org/10.3897/zookeys.754.23404 |
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author | Li, Jun Lin, Rui-Rui Zhang, Yao-Yao Hu, Kun-Jie Zhao, Ya-Qi Li, Yan Huang, Zhuo-Ran Zhang, Xu Geng, Xue-Xia Ding, Jian-Hua |
author_facet | Li, Jun Lin, Rui-Rui Zhang, Yao-Yao Hu, Kun-Jie Zhao, Ya-Qi Li, Yan Huang, Zhuo-Ran Zhang, Xu Geng, Xue-Xia Ding, Jian-Hua |
author_sort | Li, Jun |
collection | PubMed |
description | Abstract. In the present study, the complete mitogenome of Theretra japonica was sequenced and compared with other sequenced mitogenomes of Sphingidae species. The mitogenome of T. japonica, containing 37 genes (13 protein-coding genes, 22 tRNA genes, and two rRNA genes) and a region rich in adenine and thymine (AT-rich region), is a circular molecule with 15,399 base pairs (bp) in length. The order and orientation of the genes in the mitogenome are similar to those of other sequenced mitogenomes of Sphingidae species. All 13 protein-coding genes (PCGs) are initiated by ATN codons except for the cytochrome C oxidase subunit 1 gene (cox1) which is initiated by the codon CGA as observed in other lepidopteran insects. Cytochrome C oxidase subunit 2 gene (cox2) has the incomplete termination codon T and NADH dehydrogenase subunit 1 gene (nad1) terminates with TAG while the remainder terminates with TAA. Additionally, the codon distributions of the 13 PCGs revealed that Ile and Leu2 are the most frequently used codon families and codons CGG, CGC, CCG, CAG, and AGG are absent. The 431 bp AT-rich region includes the motif ATAGA followed by a 23 bp poly-T stretch, short tandem repeats (STRs) of TC and TA, two copies of a 28 bp repeat ‘ATTAAATTAATAAATTAA TATATTAATA’ and a poly-A element. Phylogenetic analyses within Sphingidae confirmed that T. japonica belongs to the Macroglossinae and showed that the phylogenetic relationship of T. japonica is closer to Ampelophaga rubiginosa than Daphnis nerii. Phylogenetic analyses within Theretra demonstrate that T. japonica, T. jugurtha, T. suffusa, and T. capensis are clustered into one clade. |
format | Online Article Text |
id | pubmed-5945705 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Pensoft Publishers |
record_format | MEDLINE/PubMed |
spelling | pubmed-59457052018-05-11 Characterization of the complete mitochondrial DNA of Theretra japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) Li, Jun Lin, Rui-Rui Zhang, Yao-Yao Hu, Kun-Jie Zhao, Ya-Qi Li, Yan Huang, Zhuo-Ran Zhang, Xu Geng, Xue-Xia Ding, Jian-Hua Zookeys Research Article Abstract. In the present study, the complete mitogenome of Theretra japonica was sequenced and compared with other sequenced mitogenomes of Sphingidae species. The mitogenome of T. japonica, containing 37 genes (13 protein-coding genes, 22 tRNA genes, and two rRNA genes) and a region rich in adenine and thymine (AT-rich region), is a circular molecule with 15,399 base pairs (bp) in length. The order and orientation of the genes in the mitogenome are similar to those of other sequenced mitogenomes of Sphingidae species. All 13 protein-coding genes (PCGs) are initiated by ATN codons except for the cytochrome C oxidase subunit 1 gene (cox1) which is initiated by the codon CGA as observed in other lepidopteran insects. Cytochrome C oxidase subunit 2 gene (cox2) has the incomplete termination codon T and NADH dehydrogenase subunit 1 gene (nad1) terminates with TAG while the remainder terminates with TAA. Additionally, the codon distributions of the 13 PCGs revealed that Ile and Leu2 are the most frequently used codon families and codons CGG, CGC, CCG, CAG, and AGG are absent. The 431 bp AT-rich region includes the motif ATAGA followed by a 23 bp poly-T stretch, short tandem repeats (STRs) of TC and TA, two copies of a 28 bp repeat ‘ATTAAATTAATAAATTAA TATATTAATA’ and a poly-A element. Phylogenetic analyses within Sphingidae confirmed that T. japonica belongs to the Macroglossinae and showed that the phylogenetic relationship of T. japonica is closer to Ampelophaga rubiginosa than Daphnis nerii. Phylogenetic analyses within Theretra demonstrate that T. japonica, T. jugurtha, T. suffusa, and T. capensis are clustered into one clade. Pensoft Publishers 2018-05-03 /pmc/articles/PMC5945705/ /pubmed/29755260 http://dx.doi.org/10.3897/zookeys.754.23404 Text en Jun Li, Rui-Rui Lin, Yao-Yao Zhang, Kun-Jie Hu, Ya-Qi Zhao, Yan Li, Zhuo-Ran Huang, Xu Zhang, Xue-Xia Geng, Jian-Hua Ding http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (CC BY 4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Li, Jun Lin, Rui-Rui Zhang, Yao-Yao Hu, Kun-Jie Zhao, Ya-Qi Li, Yan Huang, Zhuo-Ran Zhang, Xu Geng, Xue-Xia Ding, Jian-Hua Characterization of the complete mitochondrial DNA of Theretra japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title | Characterization of the complete mitochondrial DNA of Theretra
japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title_full | Characterization of the complete mitochondrial DNA of Theretra
japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title_fullStr | Characterization of the complete mitochondrial DNA of Theretra
japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title_full_unstemmed | Characterization of the complete mitochondrial DNA of Theretra
japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title_short | Characterization of the complete mitochondrial DNA of Theretra
japonica and its phylogenetic position within the Sphingidae (Lepidoptera, Sphingidae) |
title_sort | characterization of the complete mitochondrial dna of theretra
japonica and its phylogenetic position within the sphingidae (lepidoptera, sphingidae) |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5945705/ https://www.ncbi.nlm.nih.gov/pubmed/29755260 http://dx.doi.org/10.3897/zookeys.754.23404 |
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