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Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma
Pancreatic ductal adenocarcinoma (PDAC) has a poor prognosis, and the 5‐year survival rate was only 7.7%. To improve prognosis, a screening biomarker for early diagnosis of pancreatic cancer is in urgent need. Long non‐coding RNA (lncRNA) expression profiles as potential cancer prognostic biomarkers...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947154/ https://www.ncbi.nlm.nih.gov/pubmed/29239017 http://dx.doi.org/10.1002/jcb.26598 |
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author | Song, Jukun Xu, Qiuyan Zhang, Haodeng Yin, Xinhai Zhu, Chen Zhao, Ke Zhu, Jianguo |
author_facet | Song, Jukun Xu, Qiuyan Zhang, Haodeng Yin, Xinhai Zhu, Chen Zhao, Ke Zhu, Jianguo |
author_sort | Song, Jukun |
collection | PubMed |
description | Pancreatic ductal adenocarcinoma (PDAC) has a poor prognosis, and the 5‐year survival rate was only 7.7%. To improve prognosis, a screening biomarker for early diagnosis of pancreatic cancer is in urgent need. Long non‐coding RNA (lncRNA) expression profiles as potential cancer prognostic biomarkers play critical roles in development of tumorigenesis and metastasis of cancer. However, lncRNA signatures in predicting the survival of a patient with PDAC remain unknown. In the current study, we try to identify potential lncRNA biomarkers and their prognostic values in PDAC. LncRNAs expression profiles and corresponding clinical information for 182 cases with PDAC were acquired from The Cancer Genome Atlas (TCGA). A total of 14 470 lncRNA were identified in the cohort, and 175 PDAC patients had clinical variables. We obtained 108 differential expressed lncRNA via R packages. Univariate and multivariate Cox proportional hazards regression, lasso regression was performed to screen the potential prognostic lncRNA. Five lncRNAs have been recognized to significantly correlate with OS. We established a linear prognostic model of five lncRNA (C9orf139, MIR600HG, RP5‐965G21.4, RP11‐436K8.1, and CTC‐327F10.4) and divided patients into high‐ and low‐risk group according to the prognostic index. The five lncRNAs played independent prognostic biomarkers of OS of PDAC patients and the AUC of the ROC curve for the five lncRNAs signatures prediction 5‐year survival was 0.742. In addition, targeted genes of MIR600HG, C9orf139, and CTC‐327F10.4 were explored and functional enrichment was also conducted. These results suggested that this five‐lncRNAs signature could act as potential prognostic biomarkers in the prediction of PDAC patient's survival. |
format | Online Article Text |
id | pubmed-5947154 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-59471542018-05-17 Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma Song, Jukun Xu, Qiuyan Zhang, Haodeng Yin, Xinhai Zhu, Chen Zhao, Ke Zhu, Jianguo J Cell Biochem Articles Pancreatic ductal adenocarcinoma (PDAC) has a poor prognosis, and the 5‐year survival rate was only 7.7%. To improve prognosis, a screening biomarker for early diagnosis of pancreatic cancer is in urgent need. Long non‐coding RNA (lncRNA) expression profiles as potential cancer prognostic biomarkers play critical roles in development of tumorigenesis and metastasis of cancer. However, lncRNA signatures in predicting the survival of a patient with PDAC remain unknown. In the current study, we try to identify potential lncRNA biomarkers and their prognostic values in PDAC. LncRNAs expression profiles and corresponding clinical information for 182 cases with PDAC were acquired from The Cancer Genome Atlas (TCGA). A total of 14 470 lncRNA were identified in the cohort, and 175 PDAC patients had clinical variables. We obtained 108 differential expressed lncRNA via R packages. Univariate and multivariate Cox proportional hazards regression, lasso regression was performed to screen the potential prognostic lncRNA. Five lncRNAs have been recognized to significantly correlate with OS. We established a linear prognostic model of five lncRNA (C9orf139, MIR600HG, RP5‐965G21.4, RP11‐436K8.1, and CTC‐327F10.4) and divided patients into high‐ and low‐risk group according to the prognostic index. The five lncRNAs played independent prognostic biomarkers of OS of PDAC patients and the AUC of the ROC curve for the five lncRNAs signatures prediction 5‐year survival was 0.742. In addition, targeted genes of MIR600HG, C9orf139, and CTC‐327F10.4 were explored and functional enrichment was also conducted. These results suggested that this five‐lncRNAs signature could act as potential prognostic biomarkers in the prediction of PDAC patient's survival. John Wiley and Sons Inc. 2018-02-27 2018-06 /pmc/articles/PMC5947154/ /pubmed/29239017 http://dx.doi.org/10.1002/jcb.26598 Text en © 2017 The Authors. Journal of Cellular Biochemistry Published by Wiley Periodicals, Inc. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Articles Song, Jukun Xu, Qiuyan Zhang, Haodeng Yin, Xinhai Zhu, Chen Zhao, Ke Zhu, Jianguo Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title | Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title_full | Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title_fullStr | Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title_full_unstemmed | Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title_short | Five key lncRNAs considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
title_sort | five key lncrnas considered as prognostic targets for predicting pancreatic ductal adenocarcinoma |
topic | Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947154/ https://www.ncbi.nlm.nih.gov/pubmed/29239017 http://dx.doi.org/10.1002/jcb.26598 |
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