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Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives
The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyloxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-fluorobenzyl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromobenzyl) oxime...
Autores principales: | , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947808/ https://www.ncbi.nlm.nih.gov/pubmed/29765728 http://dx.doi.org/10.1107/S2056989018002876 |
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author | Osorio, Luis F. B. Carvalho, Samir A. da Silva, Edson F. Fraga, Carlos A. M. Wardell, Solange M. S. V. Milne, Bruce F. Wardell, James L. Harrison, William T. A. |
author_facet | Osorio, Luis F. B. Carvalho, Samir A. da Silva, Edson F. Fraga, Carlos A. M. Wardell, Solange M. S. V. Milne, Bruce F. Wardell, James L. Harrison, William T. A. |
author_sort | Osorio, Luis F. B. |
collection | PubMed |
description | The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyloxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-fluorobenzyl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromobenzyl) oxime, C(12)H(11)BrN(4)O(3), (III), are described. The dihedral angle between the ring systems in (I) is 49.66 (5)° and the linking N(m)—C—C=N (m = methylated) bond shows an anti conformation [torsion angle = 175.00 (15)°]. Compounds (II) and (III) are isostructural [dihedral angle between the aromatic rings = 8.31 (5)° in (II) and 5.34 (15)° in (III)] and differ from (I) in showing a near-syn conformation for the N(m)—C—C=N linker [torsion angles for (II) and (III) = 17.64 (18) and 8.7 (5)°, respectively], which allows for the occurrence of a short intramolecular C—H⋯N contact. In the crystal of (I), C—H⋯N hydrogen bonds link the molecules into [010] chains, which are cross-linked by very weak C—H⋯O bonds into (100) sheets. Weak aromatic π–π stacking interactions occur between the sheets. The extended structures of (II) and (III) feature several C—H⋯N and C—H⋯O hydrogen bonds, which link the molecules into three-dimensional networks, which are consolidated by aromatic π–π stacking interactions. Conformational energy calculations and Hirshfeld fingerprint analyses for (I), (II) and (III) are presented and discussed. |
format | Online Article Text |
id | pubmed-5947808 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-59478082018-05-15 Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives Osorio, Luis F. B. Carvalho, Samir A. da Silva, Edson F. Fraga, Carlos A. M. Wardell, Solange M. S. V. Milne, Bruce F. Wardell, James L. Harrison, William T. A. Acta Crystallogr E Crystallogr Commun Research Communications The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyloxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-fluorobenzyl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromobenzyl) oxime, C(12)H(11)BrN(4)O(3), (III), are described. The dihedral angle between the ring systems in (I) is 49.66 (5)° and the linking N(m)—C—C=N (m = methylated) bond shows an anti conformation [torsion angle = 175.00 (15)°]. Compounds (II) and (III) are isostructural [dihedral angle between the aromatic rings = 8.31 (5)° in (II) and 5.34 (15)° in (III)] and differ from (I) in showing a near-syn conformation for the N(m)—C—C=N linker [torsion angles for (II) and (III) = 17.64 (18) and 8.7 (5)°, respectively], which allows for the occurrence of a short intramolecular C—H⋯N contact. In the crystal of (I), C—H⋯N hydrogen bonds link the molecules into [010] chains, which are cross-linked by very weak C—H⋯O bonds into (100) sheets. Weak aromatic π–π stacking interactions occur between the sheets. The extended structures of (II) and (III) feature several C—H⋯N and C—H⋯O hydrogen bonds, which link the molecules into three-dimensional networks, which are consolidated by aromatic π–π stacking interactions. Conformational energy calculations and Hirshfeld fingerprint analyses for (I), (II) and (III) are presented and discussed. International Union of Crystallography 2018-02-23 /pmc/articles/PMC5947808/ /pubmed/29765728 http://dx.doi.org/10.1107/S2056989018002876 Text en © Osorio et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/ |
spellingShingle | Research Communications Osorio, Luis F. B. Carvalho, Samir A. da Silva, Edson F. Fraga, Carlos A. M. Wardell, Solange M. S. V. Milne, Bruce F. Wardell, James L. Harrison, William T. A. Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title | Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title_full | Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title_fullStr | Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title_full_unstemmed | Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title_short | Different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
title_sort | different molecular conformations in the crystal structures of three 5-nitroimidazolyl derivatives |
topic | Research Communications |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947808/ https://www.ncbi.nlm.nih.gov/pubmed/29765728 http://dx.doi.org/10.1107/S2056989018002876 |
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