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Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives

The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyl­oxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carb­alde­hyde O-(4-fluoro­benz­yl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromo­benz­yl) oxime...

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Autores principales: Osorio, Luis F. B., Carvalho, Samir A., da Silva, Edson F., Fraga, Carlos A. M., Wardell, Solange M. S. V., Milne, Bruce F., Wardell, James L., Harrison, William T. A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: International Union of Crystallography 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947808/
https://www.ncbi.nlm.nih.gov/pubmed/29765728
http://dx.doi.org/10.1107/S2056989018002876
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author Osorio, Luis F. B.
Carvalho, Samir A.
da Silva, Edson F.
Fraga, Carlos A. M.
Wardell, Solange M. S. V.
Milne, Bruce F.
Wardell, James L.
Harrison, William T. A.
author_facet Osorio, Luis F. B.
Carvalho, Samir A.
da Silva, Edson F.
Fraga, Carlos A. M.
Wardell, Solange M. S. V.
Milne, Bruce F.
Wardell, James L.
Harrison, William T. A.
author_sort Osorio, Luis F. B.
collection PubMed
description The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyl­oxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carb­alde­hyde O-(4-fluoro­benz­yl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromo­benz­yl) oxime, C(12)H(11)BrN(4)O(3), (III), are described. The dihedral angle between the ring systems in (I) is 49.66 (5)° and the linking N(m)—C—C=N (m = methyl­ated) bond shows an anti conformation [torsion angle = 175.00 (15)°]. Compounds (II) and (III) are isostructural [dihedral angle between the aromatic rings = 8.31 (5)° in (II) and 5.34 (15)° in (III)] and differ from (I) in showing a near-syn conformation for the N(m)—C—C=N linker [torsion angles for (II) and (III) = 17.64 (18) and 8.7 (5)°, respectively], which allows for the occurrence of a short intra­molecular C—H⋯N contact. In the crystal of (I), C—H⋯N hydrogen bonds link the mol­ecules into [010] chains, which are cross-linked by very weak C—H⋯O bonds into (100) sheets. Weak aromatic π–π stacking inter­actions occur between the sheets. The extended structures of (II) and (III) feature several C—H⋯N and C—H⋯O hydrogen bonds, which link the mol­ecules into three-dimensional networks, which are consolidated by aromatic π–π stacking inter­actions. Conformational energy calculations and Hirshfeld fingerprint analyses for (I), (II) and (III) are presented and discussed.
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spelling pubmed-59478082018-05-15 Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives Osorio, Luis F. B. Carvalho, Samir A. da Silva, Edson F. Fraga, Carlos A. M. Wardell, Solange M. S. V. Milne, Bruce F. Wardell, James L. Harrison, William T. A. Acta Crystallogr E Crystallogr Commun Research Communications The crystal structures of (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-benzyl­oxime, C(12)H(12)N(4)O(3), (I), (E)-1-methyl-5-nitro-1H-imidazole-2-carb­alde­hyde O-(4-fluoro­benz­yl) oxime, C(12)H(11)FN(4)O(3), (II), and (E)-1-methyl-5-nitro-1H-imidazole-2-carbaldehyde O-(4-bromo­benz­yl) oxime, C(12)H(11)BrN(4)O(3), (III), are described. The dihedral angle between the ring systems in (I) is 49.66 (5)° and the linking N(m)—C—C=N (m = methyl­ated) bond shows an anti conformation [torsion angle = 175.00 (15)°]. Compounds (II) and (III) are isostructural [dihedral angle between the aromatic rings = 8.31 (5)° in (II) and 5.34 (15)° in (III)] and differ from (I) in showing a near-syn conformation for the N(m)—C—C=N linker [torsion angles for (II) and (III) = 17.64 (18) and 8.7 (5)°, respectively], which allows for the occurrence of a short intra­molecular C—H⋯N contact. In the crystal of (I), C—H⋯N hydrogen bonds link the mol­ecules into [010] chains, which are cross-linked by very weak C—H⋯O bonds into (100) sheets. Weak aromatic π–π stacking inter­actions occur between the sheets. The extended structures of (II) and (III) feature several C—H⋯N and C—H⋯O hydrogen bonds, which link the mol­ecules into three-dimensional networks, which are consolidated by aromatic π–π stacking inter­actions. Conformational energy calculations and Hirshfeld fingerprint analyses for (I), (II) and (III) are presented and discussed. International Union of Crystallography 2018-02-23 /pmc/articles/PMC5947808/ /pubmed/29765728 http://dx.doi.org/10.1107/S2056989018002876 Text en © Osorio et al. 2018 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.http://creativecommons.org/licenses/by/2.0/uk/
spellingShingle Research Communications
Osorio, Luis F. B.
Carvalho, Samir A.
da Silva, Edson F.
Fraga, Carlos A. M.
Wardell, Solange M. S. V.
Milne, Bruce F.
Wardell, James L.
Harrison, William T. A.
Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title_full Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title_fullStr Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title_full_unstemmed Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title_short Different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
title_sort different mol­ecular conformations in the crystal structures of three 5-nitro­imidazolyl derivatives
topic Research Communications
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5947808/
https://www.ncbi.nlm.nih.gov/pubmed/29765728
http://dx.doi.org/10.1107/S2056989018002876
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