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Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images

BACKGROUND: Neuroblastoma is the most common extracranial solid tumor in children younger than 5 years old. Optimal management of neuroblastic tumors depends on many factors including histopathological classification. The gold standard for classification of neuroblastoma histological images is visua...

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Autores principales: Gheisari, Soheila, Catchpoole, Daniel R., Charlton, Amanda, Kennedy, Paul J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Medknow Publications & Media Pvt Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952548/
https://www.ncbi.nlm.nih.gov/pubmed/29862127
http://dx.doi.org/10.4103/jpi.jpi_73_17
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author Gheisari, Soheila
Catchpoole, Daniel R.
Charlton, Amanda
Kennedy, Paul J.
author_facet Gheisari, Soheila
Catchpoole, Daniel R.
Charlton, Amanda
Kennedy, Paul J.
author_sort Gheisari, Soheila
collection PubMed
description BACKGROUND: Neuroblastoma is the most common extracranial solid tumor in children younger than 5 years old. Optimal management of neuroblastic tumors depends on many factors including histopathological classification. The gold standard for classification of neuroblastoma histological images is visual microscopic assessment. In this study, we propose and evaluate a deep learning approach to classify high-resolution digital images of neuroblastoma histology into five different classes determined by the Shimada classification. SUBJECTS AND METHODS: We apply a combination of convolutional deep belief network (CDBN) with feature encoding algorithm that automatically classifies digital images of neuroblastoma histology into five different classes. We design a three-layer CDBN to extract high-level features from neuroblastoma histological images and combine with a feature encoding model to extract features that are highly discriminative in the classification task. The extracted features are classified into five different classes using a support vector machine classifier. DATA: We constructed a dataset of 1043 neuroblastoma histological images derived from Aperio scanner from 125 patients representing different classes of neuroblastoma tumors. RESULTS: The weighted average F-measure of 86.01% was obtained from the selected high-level features, outperforming state-of-the-art methods. CONCLUSION: The proposed computer-aided classification system, which uses the combination of deep architecture and feature encoding to learn high-level features, is highly effective in the classification of neuroblastoma histological images.
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spelling pubmed-59525482018-06-01 Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images Gheisari, Soheila Catchpoole, Daniel R. Charlton, Amanda Kennedy, Paul J. J Pathol Inform Research Article BACKGROUND: Neuroblastoma is the most common extracranial solid tumor in children younger than 5 years old. Optimal management of neuroblastic tumors depends on many factors including histopathological classification. The gold standard for classification of neuroblastoma histological images is visual microscopic assessment. In this study, we propose and evaluate a deep learning approach to classify high-resolution digital images of neuroblastoma histology into five different classes determined by the Shimada classification. SUBJECTS AND METHODS: We apply a combination of convolutional deep belief network (CDBN) with feature encoding algorithm that automatically classifies digital images of neuroblastoma histology into five different classes. We design a three-layer CDBN to extract high-level features from neuroblastoma histological images and combine with a feature encoding model to extract features that are highly discriminative in the classification task. The extracted features are classified into five different classes using a support vector machine classifier. DATA: We constructed a dataset of 1043 neuroblastoma histological images derived from Aperio scanner from 125 patients representing different classes of neuroblastoma tumors. RESULTS: The weighted average F-measure of 86.01% was obtained from the selected high-level features, outperforming state-of-the-art methods. CONCLUSION: The proposed computer-aided classification system, which uses the combination of deep architecture and feature encoding to learn high-level features, is highly effective in the classification of neuroblastoma histological images. Medknow Publications & Media Pvt Ltd 2018-05-02 /pmc/articles/PMC5952548/ /pubmed/29862127 http://dx.doi.org/10.4103/jpi.jpi_73_17 Text en Copyright: © 2018 Journal of Pathology Informatics http://creativecommons.org/licenses/by-nc-sa/4.0 This is an open access journal, and articles are distributed under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike 4.0 License, which allows others to remix, tweak, and build upon the work non-commercially, as long as appropriate credit is given and the new creations are licensed under the identical terms.
spellingShingle Research Article
Gheisari, Soheila
Catchpoole, Daniel R.
Charlton, Amanda
Kennedy, Paul J.
Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title_full Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title_fullStr Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title_full_unstemmed Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title_short Convolutional Deep Belief Network with Feature Encoding for Classification of Neuroblastoma Histological Images
title_sort convolutional deep belief network with feature encoding for classification of neuroblastoma histological images
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5952548/
https://www.ncbi.nlm.nih.gov/pubmed/29862127
http://dx.doi.org/10.4103/jpi.jpi_73_17
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